espresso -
3.1.1 (opEn-Source Package for Research in Electronic Structure, Simulation, and Optimization)
kincontour -
1.12.030213 (Read value/coordinate lists to produce contour maps in kinemage format)
king -
1.53.060628 (An interactive system for 3D graphics (primarily molecular))
mage -
6.44.060606 (Mage is a 3D vector display program which shows 'kinemage' graphics)
mopro-bin -
1 (Crystallographic structure or charge density refinement)
pmb -
20060606 (Automated structure refinement tools for CNS)
prekin -
6.42.060120 (Prepares molecular kinemages (input files for Mage and KiNG) from PDB-format coordinate files)
procheck -
3.5.4 (Checks the stereochemical quality of a protein structure)
profit -
2.5.3.1 (Designed to be the ultimate protein least squares fitting program)
pymol -
9999 (A Python-extensible molecular graphics system.)
pymss -
0.8.4 (Multiple superposition of proteins, using a genetic algorithm for optimization)
theseus -
1.0.2 (Maximum likelihood superpositioning and analysis of macromolecular structures)
tinker -
4.2-r1 (TINKER is a molecular modeling package that includes force fields for handing large molecules and large systems, such as AMBER and CHARMM. A Java based visualization front end is included.)
campos-asap -
2.14 (ASAP is a calculator for campos-ase, implementing the Effective Medium Potential)
campos-ase -
2.3 (The Atomistic Simulation Environment is the core of the CampOS simulation software. There are Python modules for: building atomic structures, molecular dynamics, structure optimization, analysis and much more.)
campos-dacapo -
2.7.7 (Dacapo is a plane-wave based Density Functional Theory program)
campos-gridpaw -
0.14.0 (Real-spaced implementation of Density Functional Theory with Projector-Augmented Waves)
exciting -
0.9.74 (A full-potential linearised augmented-plane wave (FP-LAPW) code with many advanced features)