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ARRmData : Example dataset for normalizatio... (see metadata) ( )
ARRmNormalization : Adaptive Robust Regression norma... (see metadata) ( )
AffyCompatible : Affymetrix GeneChip software compatibility ( )
AffyExpress : Affymetrix Quality Assessment and Analysis Tool ( )
AffyRNADegradation : Analyze and correct probe positi... (see metadata) ( )
AffyTiling : Easy extraction of individual pr... (see metadata) ( )
AffymetrixDataTestFiles : Affymetrix data files (CEL, CDF,... (see metadata) ( )
Agi4x44PreProcess : PreProcessing of Agilent 4x44 array data ( )
AgiMicroRna : Processing and Differential Expr... (see metadata) ( )
AllelicImbalance : Investigates allele specific expression ( )
AnnotationForge : Code for Building Annotation Database Packages ( )
AnnotationFuncs : Annotation translation functions ( )
AnnotationHub : A client for retrieving Biocondu... (see metadata) ( )
ArrayExpress : Access the ArrayExpress Microarr... (see metadata) ( )
ArrayExpressHTS : ArrayExpress High Throughput Seq... (see metadata) ( )
BSgenome_Alyrata_JGI_v1 : Arabidopsis lyrata full genome (JGI version V1.0) ( )
BSgenome_Amellifera_BeeBase_assembly4 : Apis mellifera (Honey Bee) full ... (see metadata) ( )
BSgenome_Amellifera_UCSC_apiMel2 : Apis mellifera (Honey Bee) full ... (see metadata) ( )
BSgenome_Athaliana_TAIR_04232008 : Arabidopsis thaliana full genome... (see metadata) ( )
BSgenome_Athaliana_TAIR_TAIR9 : Arabidopsis thaliana full genome (TAIR9) ( )
BSgenome_Btaurus_UCSC_bosTau3 : Bos taurus (Cow) full genome (UC... (see metadata) ( )
BSgenome_Btaurus_UCSC_bosTau4 : Bos taurus (Cow) full genome (UC... (see metadata) ( )
BSgenome_Btaurus_UCSC_bosTau6 : Bos taurus (Cow) full genome (UC... (see metadata) ( )
BSgenome_Celegans_UCSC_ce10 : Caenorhabditis elegans (Worm) fu... (see metadata) ( )
BSgenome_Celegans_UCSC_ce2 : Caenorhabditis elegans (Worm) fu... (see metadata) ( )
BSgenome_Celegans_UCSC_ce6 : Caenorhabditis elegans (Worm) fu... (see metadata) ( )
BSgenome_Cfamiliaris_UCSC_canFam2 : Canis lupus familiaris full geno... (see metadata) ( )
BSgenome_Cfamiliaris_UCSC_canFam3 : Canis lupus familiaris (Dog) ful... (see metadata) ( )
BSgenome_Dmelanogaster_UCSC_dm2 : Drosophila melanogaster (Fly) fu... (see metadata) ( )
BSgenome_Dmelanogaster_UCSC_dm3 : Drosophila melanogaster (Fly) fu... (see metadata) ( )
BSgenome_Drerio_UCSC_danRer5 : Danio rerio (Zebrafish) full gen... (see metadata) ( )
BSgenome_Drerio_UCSC_danRer6 : Danio rerio (Zebrafish) full gen... (see metadata) ( )
BSgenome_Drerio_UCSC_danRer7 : Danio rerio (Zebrafish) full gen... (see metadata) ( )
BSgenome_Ecoli_NCBI_20080805 : Escherichia coli full genomes ( )
BSgenome_Gaculeatus_UCSC_gasAcu1 : Gasterosteus aculeatus (Stickleb... (see metadata) ( )
BSgenome_Ggallus_UCSC_galGal3 : Gallus gallus (Chicken) full gen... (see metadata) ( )
BSgenome_Ggallus_UCSC_galGal4 : Gallus gallus (Chicken) full gen... (see metadata) ( )
BSgenome_Hsapiens_UCSC_hg17 : Homo sapiens (Human) full genome... (see metadata) ( )
BSgenome_Hsapiens_UCSC_hg18 : Homo sapiens (Human) full genome... (see metadata) ( )
BSgenome_Hsapiens_UCSC_hg19 : Homo sapiens (Human) full genome... (see metadata) ( )
BSgenome_Mmulatta_UCSC_rheMac2 : Macaca mulatta (Rhesus) full gen... (see metadata) ( )
BSgenome_Mmulatta_UCSC_rheMac3 : Macaca mulatta (Rhesus) full gen... (see metadata) ( )
BSgenome_Mmusculus_UCSC_mm10 : Mus musculus (Mouse) full genome... (see metadata) ( )
BSgenome_Mmusculus_UCSC_mm8 : Mus musculus (Mouse) full genome... (see metadata) ( )
BSgenome_Mmusculus_UCSC_mm9 : Mus musculus (Mouse) full genome... (see metadata) ( )
BSgenome_Osativa_MSU_MSU7 : Oryza sativa full genome (MSU7) ( )
BSgenome_Ptroglodytes_UCSC_panTro2 : Pan troglodytes (Chimp) full gen... (see metadata) ( )
BSgenome_Ptroglodytes_UCSC_panTro3 : Pan troglodytes (Chimp) full gen... (see metadata) ( )
BSgenome_Rnorvegicus_UCSC_rn4 : Rattus norvegicus (Rat) full gen... (see metadata) ( )
BSgenome_Rnorvegicus_UCSC_rn5 : Rattus norvegicus (Rat) full gen... (see metadata) ( )
BSgenome_Scerevisiae_UCSC_sacCer1 : Saccharomyces cerevisiae (Yeast)... (see metadata) ( )
BSgenome_Scerevisiae_UCSC_sacCer2 : Saccharomyces cerevisiae (Yeast)... (see metadata) ( )
BSgenome_Scerevisiae_UCSC_sacCer3 : Saccharomyces cerevisiae (Yeast)... (see metadata) ( )
BSgenome_Tgondii_ToxoDB_7_0 : Toxoplasma gondii ME49 (ToxoDB-7.0) ( )
BeadArrayUseCases : Analysing Illumina BeadArray exp... (see metadata) ( )
BeadDataPackR : Compression of Illumina BeadArray data ( )
BiocCaseStudies : BiocCaseStudies: Support for the... (see metadata) ( )
BiocInstaller : Install/Update Bioconductor and CRAN Packages ( )
BiocParallel : Bioconductor facilities for parallel evaluation ( )
BiocStyle : Standard styles for vignettes an... (see metadata) ( )
Biostrings : String objects representing biol... (see metadata) ( )
BrainStars : query gene expression data and p... (see metadata) ( )
BufferedMatrix : A matrix data storage object hel... (see metadata) ( )
BufferedMatrixMethods : Microarray Data related methods ... (see metadata) ( )
CGHnormaliter : Normalization of array CGH data ... (see metadata) ( )
CGHregions : Dimension Reduction for Array CG... (see metadata) ( )
CNVtools : A package to test genetic associ... (see metadata) ( )
CancerMutationAnalysis : Cancer mutation analysis ( )
ChIPXpress : ChIPXpress: enhanced transcripti... (see metadata) ( )
ChemmineOB : R interface to a subset of OpenB... (see metadata) ( )
CoCiteStats : Different test statistics based on co-citation. ( )
ConnectivityMap : Functional connections between d... (see metadata) ( )
ConsensusClusterPlus : ConsensusClusterPlus ( )
DAVIDQuery : Retrieval from the DAVID bioinfo... (see metadata) ( )
DeSousa2013 : Poor prognosis colon cancer is d... (see metadata) ( )
DeconRNASeq : Deconvolution of Heterogeneous T... (see metadata) ( )
DirichletMultinomial : Dirichlet-Multinomial Mixture Mo... (see metadata) ( )
DonaPLLP2013 : Supplementary data package for D... (see metadata) ( )
DriverNet : Drivernet: uncovering somatic dr... (see metadata) ( )
DrugVsDisease : Comparison of disease and drug p... (see metadata) ( )
DrugVsDiseasedata : Drug versus Disease Data ( )
EBarrays : Unified Approach for Simultaneou... (see metadata) ( )
EBcoexpress : EBcoexpress for Differential Co-... (see metadata) ( )
ENVISIONQuery : Retrieval from the ENVISION bioi... (see metadata) ( )
EatonEtAlChIPseq : ChIP-seq data of ORC-binding sit... (see metadata) ( )
ExpressionView : Visualize biclusters identified ... (see metadata) ( )
FANTOM3and4CAGE : CAGE data from FANTOM3 and FANTOM4 projects ( )
FDb_FANTOM4_promoters_hg19 : Annotation package for FANTOM4 p... (see metadata) ( )
FDb_UCSC_snp135common_hg19 : UCSC common SNPs track for dbSNP build 135 ( )
FDb_UCSC_snp137common_hg19 : UCSC common SNPs track for dbSNP build 137 ( )
FDb_UCSC_tRNAs : Annotation package for FeatureDb object(s) ( )
Fletcher2013a : Gene expression data from breast... (see metadata) ( )
Fletcher2013b : Master regulators of FGFR2 signa... (see metadata) ( )
FlowSorted_Blood_450k : Illumina HumanMethylation data o... (see metadata) ( )
FunciSNP_data : Various data sets for use with t... (see metadata) ( )
GEOsubmission : Prepares microarray data for submission to GEO ( )
GGHumanMethCancerPanelv1_db : Illumina Golden Gate Human Methy... (see metadata) ( )
GWASdata : Data used in the examples and vi... (see metadata) ( )
GeneExpressionSignature : Gene Expression Signature based Similarity Metric ( )
GeneNetworkBuilder : Build Regulatory Network from Ch... (see metadata) ( )
GeneSelectMMD : Gene selection based on the marg... (see metadata) ( )
GeneSelector : Stability and Aggregation of ranked gene lists ( )
GeneticsDesign : Functions for designing genetics studies ( )
GeneticsPed : Pedigree and genetic relationship functions ( )
GenomeGraphs : Plotting genomic information from Ensembl ( )
GenomicFeatures : Tools for making and manipulatin... (see metadata) ( )
GenomicRanges : Representation and manipulation ... (see metadata) ( )
GlobalAncova : Calculates a global test for dif... (see metadata) ( )
HD2013SGI : Mapping genetic interactions in ... (see metadata) ( )
HIVcDNAvantWout03 : T cell line infections with HIV-1 LAI (BRU) ( )
HTSFilter : Filter replicated high-throughpu... (see metadata) ( )
HTSanalyzeR : Gene set over-representation, en... (see metadata) ( )
Harshlight : A corrective make-up program for microarray chips ( )
Hiiragi2013 : Cell-to-cell expression variabil... (see metadata) ( )
Homo_sapiens : Annotation package for the Homo.sapiens object ( )
Hs6UG171_db : A package containing metadata for Hs6UG171 arrays ( )
HsAgilentDesign026652_db : Agilent Chips that use Agilent d... (see metadata) ( )
HuExExonProbesetLocation : Probe sequence data for microarrays of type HuEx ( )
HuExExonProbesetLocationHg18 : Exon-level probeset chromosome l... (see metadata) ( )
HuExExonProbesetLocationHg19 : Exon-level probeset chromosome l... (see metadata) ( )
IdMappingRetrieval : ID Mapping Data Retrieval ( )
Illumina450ProbeVariants_db : Annotation Package combining var... (see metadata) ( )
IlluminaDataTestFiles : Illumina microarray files (IDAT) for testing ( )
IlluminaHumanMethylation27k_db : Illumina Illumina Human Methylat... (see metadata) ( )
IlluminaHumanMethylation27kmanifest : Annotation for Illuminas 27k methylation arrays ( )
IlluminaHumanMethylation450k_db : Illumina Human Methylation 450k annotation data ( )
IlluminaHumanMethylation450kanno_ilmn12_hg19 : Annotation for Illuminas 450k methylation arrays ( )
IlluminaHumanMethylation450kmanifest : Annotation for Illuminas 450k methylation arrays ( )
IlluminaHumanMethylation450kprobe : Probe sequence data for microarr... (see metadata) ( )
IsoGeneGUI : A graphical user interface to co... (see metadata) ( )
JazaeriMetaData_db : A data package containing annota... (see metadata) ( )
KEGGdzPathwaysGEO : KEGG Disease Datasets from GEO ( )
KEGGgraph : KEGGgraph: A graph approach to K... (see metadata) ( )
KEGGprofile : An annotation and visualization ... (see metadata) ( )
LAPOINTE_db : A package containing metadata for LAPOINTE arrays ( )
LiebermanAidenHiC2009 : Selected data from the HiC paper... (see metadata) ( )
LungCancerACvsSCCGEO : A lung cancer dataset that can b... (see metadata) ( )
LungCancerLines : Reads from Two Lung Cancer Cell Lines ( )
MAQCsubsetAFX : MAQC data subset for the Affymetrix platform ( )
MAQCsubsetILM : MAQC data subset for the Illumina platform ( )
MCRestimate : Misclassification error estimati... (see metadata) ( )
MLInterfaces : Uniform interfaces to R machine ... (see metadata) ( )
MMDiffBamSubset : Example ChIP-Seq data for the MMDiff package ( )
MassSpecWavelet : Mass spectrum processing by wave... (see metadata) ( )
MeasurementError_cor : Measurement Error model estimate... (see metadata) ( )
MinimumDistance : A package for de novo CNV detect... (see metadata) ( )
MmAgilentDesign026655_db : Agilent Chips that use Agilent d... (see metadata) ( )
MmPalateMiRNA : Murine Palate miRNA Expression Analysis ( )
MoExExonProbesetLocation : Probe sequence data for microarrays of type MoEx ( )
Mu15v1_db : FHCRC Genomics Shared Resource M... (see metadata) ( )
Mu22v3_db : FHCRC Genomics Shared Resource M... (see metadata) ( )
Mulder2012 : Predicting functional networks a... (see metadata) ( )
Mus_musculus : Annotation package for the Mus.musculus object ( )
NCIgraphData : Data for the NCIgraph software package ( )
NarrowPeaks : Analysis of Variation in ChIP-se... (see metadata) ( )
Neve2006 : expression and CGH data on breas... (see metadata) ( )
Norway981_db : Norway981 http://genome-www5.sta... (see metadata) ( )
OmicCircos : High-quality circular visualization of omic data ( )
OperonHumanV3_db : FHCRC Nelson Lab OperonHumanV3 A... (see metadata) ( )
OrganismDbi : Software to enable the smooth in... (see metadata) ( )
OutlierD : Outlier detection using quantile... (see metadata) ( )
PANTHER_db : A set of annotation maps describ... (see metadata) ( )
POCRCannotation_db : A package containing metadata for POCRC arrays ( )
PREDAsampledata : expression and copy number data ... (see metadata) ( )
PWMEnrich_Dmelanogaster_background : D. melanogaster background for PWMEnrich ( )
PWMEnrich_Hsapiens_background : H. sapiens background for PWMEnrich ( )
PWMEnrich_Mmusculus_background : M. musculus background for PWMEnrich ( )
PartheenMetaData_db : PartheenMetaData http://swegene.... (see metadata) ( )
PathNetData : Experimental data for the PathNet package ( )
PolyPhen_Hsapiens_dbSNP131 : PolyPhen Predictions for Homo sa... (see metadata) ( )
RDAVIDWebService : An R Package for retrieving data... (see metadata) ( )
RDRToolbox : A package for nonlinear dimensio... (see metadata) ( )
RIPSeeker : RIPSeeker: a statistical package... (see metadata) ( )
RNAinteract : Estimate Pairwise Interactions f... (see metadata) ( )
RNAinteractMAPK : Mapping of Signalling Networks t... (see metadata) ( )
RNAseqData_HNRNPC_bam_chr14 : Aligned reads from RNAseq experi... (see metadata) ( )
RNAseqData_HeLa_bam_chr14 : DEPRECATED (was renamed RNAseqDa... (see metadata) ( )
RWebServices : Expose R functions as web servic... (see metadata) ( )
RaExExonProbesetLocation : Probe sequence data for microarrays of type RaEx ( )
RankProd : Rank Product method for identify... (see metadata) ( )
Rattus_norvegicus : Annotation package for the Rattu... (see metadata) ( )
ReportingTools : Tools for making reports in various formats ( )
Resourcerer : Reads annotation data from TIGR ... (see metadata) ( )
RforProteomics : Companion package to the Using R... (see metadata) ( )
RnAgilentDesign028282_db : Agilent Chips that use Agilent d... (see metadata) ( )
RnaSeqTutorial : RNA-Seq Tutorial (EBI Cambridge UK, October 2011) ( )
Roberts2005Annotation_db : Roberts2005Annotation Annotation... (see metadata) ( )
Roleswitch : Infer miRNA-mRNA interactions us... (see metadata) ( )
Rsamtools : Binary alignment (BAM), variant ... (see metadata) ( )
Rsubread : Rsubread: high-performance read ... (see metadata) ( )
SIFT_Hsapiens_dbSNP132 : SIFT Predictions for Homo sapiens dbSNP build 132 ( )
SNPlocs_Hsapiens_dbSNP_20090506 : SNP locations for Homo sapiens (dbSNP Build 130) ( )
SNPlocs_Hsapiens_dbSNP_20100427 : SNP locations for Homo sapiens (dbSNP BUILD 131) ( )
SNPlocs_Hsapiens_dbSNP_20101109 : SNP locations for Homo sapiens (dbSNP Build 132) ( )
SNPlocs_Hsapiens_dbSNP_20110815 : SNP locations for Homo sapiens (dbSNP Build 134) ( )
SNPlocs_Hsapiens_dbSNP_20111119 : SNP locations for Homo sapiens (dbSNP Build 135) ( )
SNPlocs_Hsapiens_dbSNP_20120608 : SNP locations for Homo sapiens (dbSNP Build 137) ( )
SamSPECTRAL : Identifies cell population in flow cytometry data. ( )
ShortRead : Classes and methods for high-thr... (see metadata) ( )
SomatiCAData : An example cancer whole genome s... (see metadata) ( )
SomaticCancerAlterations : Somatic Cancer Alterations ( )
SpikeInSubset : Part of Affymetrixs Spike-In Experiment Data ( )
TBX20BamSubset : Subset of BAM files from the TBX20 experiment ( )
TCGAMethylation450k : The Cancer Genome Atlas Illumina... (see metadata) ( )
TargetScore : TargetScore: Infer microRNA targ... (see metadata) ( )
TargetSearch : A package for the analysis of GC... (see metadata) ( )
TargetSearchData : Example GC-MS data for TargetSearch Package ( )
TransView : Read density map construction an... (see metadata) ( )
TurboNorm : A fast scatterplot smoother suit... (see metadata) ( )
TxDb_Athaliana_BioMart_plantsmart10 : Annotation package for the Athal... (see metadata) ( )
TxDb_Athaliana_BioMart_plantsmart12 : Annotation package for TranscriptDb object(s) ( )
TxDb_Athaliana_BioMart_plantsmart14 : Annotation package for TranscriptDb object(s) ( )
TxDb_Athaliana_BioMart_plantsmart16 : Annotation package for TranscriptDb object(s) ( )
TxDb_Athaliana_BioMart_plantsmart19 : Annotation package for TranscriptDb object(s) ( )
TxDb_Celegans_UCSC_ce6_ensGene : Annotation package for TranscriptDb object(s) ( )
TxDb_Dmelanogaster_UCSC_dm3_ensGene : Annotation package for TranscriptDb object(s) ( )
TxDb_Hsapiens_UCSC_hg18_knownGene : Annotation package for TranscriptDb object(s) ( )
TxDb_Hsapiens_UCSC_hg19_knownGene : Annotation package for TranscriptDb object(s) ( )
TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts : Annotation package for TranscriptDb object(s) ( )
TxDb_Mmusculus_UCSC_mm10_ensGene : Annotation package for TranscriptDb object(s) ( )
TxDb_Mmusculus_UCSC_mm10_knownGene : Annotation package for TranscriptDb object(s) ( )
TxDb_Mmusculus_UCSC_mm9_knownGene : Annotation package for TranscriptDb object(s) ( )
TxDb_Rnorvegicus_UCSC_rn4_ensGene : Annotation package for TranscriptDb object(s) ( )
TxDb_Rnorvegicus_UCSC_rn5_refGene : Annotation package for TranscriptDb object(s) ( )
TxDb_Scerevisiae_UCSC_sacCer2_sgdGene : Annotation package for TranscriptDb object(s) ( )
TxDb_Scerevisiae_UCSC_sacCer3_sgdGene : Annotation package for TranscriptDb object(s) ( )
VanillaICE : A Hidden Markov Model for high t... (see metadata) ( )
VariantAnnotation : Annotation of Genetic Variants ( )
a4Classif : Automated Affymetrix Array Analy... (see metadata) ( )
a4Preproc : Automated Affymetrix Array Analy... (see metadata) ( )
a4Reporting : Automated Affymetrix Array Analy... (see metadata) ( )
adme16cod_db : Codelink ADME Rat 16-Assay Bioar... (see metadata) ( )
affyContam : structured corruption of affymetrix cel file data ( )
affyQCReport : QC Report Generation for affyBatch objects ( )
affycomp : Graphics Toolbox for Assessment ... (see metadata) ( )
affycoretools : Functions useful for those doing... (see metadata) ( )
altcdfenvs : alternative CDF environments (ak... (see metadata) ( )
annotationTools : Annotate microarrays and perform... (see metadata) ( )
anopheles_db0 : Base Level Annotation databases for anopheles ( )
antiProfiles : Implementation of gene expression anti-profiles ( )
antiProfilesData : Normal colon and cancer preproce... (see metadata) ( )
arabidopsis_db0 : Base Level Annotation databases for arabidopsis ( )
aroma_light : Light-weight methods for normali... (see metadata) ( )
arrayMvout : multivariate outlier detection f... (see metadata) ( )
arrayQuality : Assessing array quality on spotted arrays ( )
arrayQualityMetrics : Quality metrics on microarray data sets ( )
ath1121501_db : Affymetrix Arabidopsis ATH1 Geno... (see metadata) ( )
ath1121501probe : Probe sequence data for microarr... (see metadata) ( )
barley1probe : Probe sequence data for microarr... (see metadata) ( )
beadarray : Quality assessment and low-level... (see metadata) ( )
beadarrayExampleData : Example data for the beadarray package ( )
beadarraySNP : Normalization and reporting of I... (see metadata) ( )
bigmemoryExtras : An extension of the bigmemory pa... (see metadata) ( )
biomvRCNS : Copy Number study and Segmentati... (see metadata) ( )
biovizBase : Basic graphic utilities for visu... (see metadata) ( )
bladderbatch : Bladder gene expression data ill... (see metadata) ( )
bovineprobe : Probe sequence data for microarrays of type bovine ( )
breastCancerMAINZ : Gene expression dataset publishe... (see metadata) ( )
breastCancerNKI : Genexpression dataset published ... (see metadata) ( )
breastCancerTRANSBIG : Gene expression dataset publishe... (see metadata) ( )
breastCancerUNT : Gene expression dataset publishe... (see metadata) ( )
breastCancerUPP : Gene expression dataset publishe... (see metadata) ( )
breastCancerVDX : Gene expression datasets publish... (see metadata) ( )
bronchialIL13 : time course experiment involving il13 ( )
bsseqData : Example whole genome bisulfite d... (see metadata) ( )
bsubtilisprobe : Probe sequence data for microarr... (see metadata) ( )
cancerclass : Development and validation of di... (see metadata) ( )
cancerdata : Development and validation of di... (see metadata) ( )
canine2_db : Affymetrix canine2 annotation data (chip canine2) ( )
canine2probe : Probe sequence data for microarr... (see metadata) ( )
canineprobe : Probe sequence data for microarrays of type canine ( )
celegans_db : Affymetrix celegans annotation d... (see metadata) ( )
celegansprobe : Probe sequence data for microarr... (see metadata) ( )
charmData : An example dataset for use with the charm package ( )
cheung2010 : resources for genetics of gene e... (see metadata) ( )
chicken_db : Affymetrix chicken annotation data (chip chicken) ( )
chicken_db0 : Base Level Annotation databases for chicken ( )
chickenprobe : Probe sequence data for microarr... (see metadata) ( )
chipenrich_data : Gene set enrichment analysis for ChIP-seq data ( )
citrusprobe : Probe sequence data for microarrays of type citrus ( )
cleanUpdTSeq : This package classifies putative... (see metadata) ( )
clonotypeR : High throughput analysis of T ce... (see metadata) ( )
clusterProfiler : statistical analysis and visuliz... (see metadata) ( )
clusterStab : Compute cluster stability scores... (see metadata) ( )
cnvGSAdata : Data used in the vignette of the cnvGSA package ( )
copynumber : Segmentation of single- and mult... (see metadata) ( )
cottonprobe : Probe sequence data for microarrays of type cotton ( )
cummeRbund : Analysis, exploration, manipulat... (see metadata) ( )
curatedBladderData : Bladder Cancer Gene Expression Analysis ( )
curatedOvarianData : Clinically Annotated Data for th... (see metadata) ( )
customProDB : Generate customized protein data... (see metadata) ( )
davidTiling : Data and analysis scripts for Da... (see metadata) ( )
diffGeneAnalysis : Performs differential gene expression Analysis ( )
domainsignatures : Geneset enrichment based on Inte... (see metadata) ( )
dressCheck : data and software for checking D... (see metadata) ( )
drosgenome1_db : Affymetrix Drosophila Genome Arr... (see metadata) ( )
drosgenome1probe : Probe sequence data for microarr... (see metadata) ( )
drosophila2_db : Affymetrix Drosophila Genome 2.0... (see metadata) ( )
drosophila2probe : Probe sequence data for microarr... (see metadata) ( )
dyebiasexamples : Example data for the dyebias pac... (see metadata) ( )
easyRNASeq : Count summarization and normaliz... (see metadata) ( )
ecoli2_db : Affymetrix E. coli Genome 2.0 Ar... (see metadata) ( )
ecoli2probe : Probe sequence data for microarrays of type ecoli2 ( )
ecoliK12_db0 : Base Level Annotation databases ... (see metadata) ( )
ecoliLeucine : Experimental data with Affymetrix E. coli chips ( )
ecoliSakai_db0 : Base Level Annotation databases ... (see metadata) ( )
ecoliasv2probe : Probe sequence data for microarr... (see metadata) ( )
ecoliprobe : Probe sequence data for microarrays of type ecoli ( )
encoDnaseI : data provided by UCSC for Cd4 ra... (see metadata) ( )
epigenomix : Epigenetic and gene expression d... (see metadata) ( )
exomeCopy : Copy number variant detection fr... (see metadata) ( )
explorase : GUI for exploratory data analysi... (see metadata) ( )
fabiaData : Data sets for FABIA (Factor Anal... (see metadata) ( )
factDesign : Factorial designed microarray experiment analysis ( )
ffpeExampleData : Illumina DASL example microarray data ( )
fibroEset : exprSet for Karaman et al. (2003) fibroblasts data ( )
flowFitExampleData : Example data for the flowFit package ( )
flowFlowJo : Tools for extracting information... (see metadata) ( )
flowPlots : flowPlots: analysis plots and da... (see metadata) ( )
flowTrans : Parameter Optimization for Flow ... (see metadata) ( )
flowWorkspaceData : A data package containing two fl... (see metadata) ( )
gahgu133a_db : Genecards derived annotations fo... (see metadata) ( )
gahgu133aprobe : Probe sequence data for microarr... (see metadata) ( )
gahgu133b_db : Genecards derived annotations fo... (see metadata) ( )
gahgu133bprobe : Probe sequence data for microarr... (see metadata) ( )
gahgu133plus2_db : Genecards derived annotations fo... (see metadata) ( )
gahgu133plus2probe : Probe sequence data for microarr... (see metadata) ( )
gahgu95av2_db : Genecards derived annotations fo... (see metadata) ( )
gahgu95av2probe : Probe sequence data for microarr... (see metadata) ( )
gahgu95b_db : Genecards derived annotations fo... (see metadata) ( )
gahgu95bprobe : Probe sequence data for microarr... (see metadata) ( )
gahgu95c_db : Genecards derived annotations fo... (see metadata) ( )
gahgu95cprobe : Probe sequence data for microarr... (see metadata) ( )
gahgu95d_db : Genecards derived annotations fo... (see metadata) ( )
gahgu95dprobe : Probe sequence data for microarr... (see metadata) ( )
gahgu95e_db : Genecards derived annotations fo... (see metadata) ( )
gahgu95eprobe : Probe sequence data for microarr... (see metadata) ( )
gaschYHS : ExpressionSet for response of ye... (see metadata) ( )
gatingMLData : Data and XML files for Gating-ML Test suite ( )
gcspikelite : Spike-in data for GC/MS data and... (see metadata) ( )
geNetClassifier : classify diseases and build asso... (see metadata) ( )
geneLenDataBase : Lengths of mRNA transcripts for ... (see metadata) ( )
geneRecommender : A gene recommender algorithm to ... (see metadata) ( )
genefilter : genefilter: methods for filterin... (see metadata) ( )
geneplotter : Graphics related functions for Bioconductor ( )
genomeIntervals : Operations on genomic intervals ( )
genomewidesnp5Crlmm : Metadata for fast genotyping wit... (see metadata) ( )
genomewidesnp6Crlmm : Metadata for fast genotyping wit... (see metadata) ( )
globaltest : Testing groups of covariates/fea... (see metadata) ( )
goProfiles : goProfiles: an R package for the... (see metadata) ( )
h10kcod_db : Codelink UniSet Human I Bioarray... (see metadata) ( )
h20kcod_db : Codelink UniSet Human 20k I Bioa... (see metadata) ( )
hapFabia : hapFabia: Identification of very... (see metadata) ( )
hapmap100khind : Sample data - Hapmap 100K HIND Affymetrix ( )
hapmap100kxba : Sample data - Hapmap 100K XBA Affymetrix ( )
hapmap500knsp : Sample data - Hapmap 500K NSP Affymetrix ( )
hapmap500ksty : Sample data - Hapmap 500K STY Affymetrix ( )
hcg110_db : Affymetrix Human Cancer G110 Arr... (see metadata) ( )
hcg110probe : Probe sequence data for microarrays of type hcg110 ( )
hgfocus_db : Affymetrix Human Genome Focus Ar... (see metadata) ( )
hgfocusprobe : Probe sequence data for microarr... (see metadata) ( )
hgu133a2_db : Affymetrix Human Genome U133A 2.... (see metadata) ( )
hgu133a2frmavecs : Vectors used by frma for microar... (see metadata) ( )
hgu133a2probe : Probe sequence data for microarr... (see metadata) ( )
hgu133a_db : Affymetrix Human Genome U133 Set... (see metadata) ( )
hgu133abarcodevecs : hgu133a data for barcode ( )
hgu133afrmavecs : Vectors used by frma for microar... (see metadata) ( )
hgu133aprobe : Probe sequence data for microarr... (see metadata) ( )
hgu133atagprobe : Probe sequence data for microarr... (see metadata) ( )
hgu133b_db : Affymetrix Human Genome U133 Set... (see metadata) ( )
hgu133bprobe : Probe sequence data for microarr... (see metadata) ( )
hgu133plus2_db : Affymetrix Human Genome U133 Plu... (see metadata) ( )
hgu133plus2barcodevecs : hgu133plus2 data for barcode ( )
hgu133plus2frmavecs : Vectors used by frma for microar... (see metadata) ( )
hgu133plus2probe : Probe sequence data for microarr... (see metadata) ( )
hgu219_db : Affymetrix Human Genome 219 Plat... (see metadata) ( )
hgu219probe : Probe sequence data for microarrays of type hgu219 ( )
hgu2beta7 : A data package containing annota... (see metadata) ( )
hgu95a_db : Affymetrix Human Genome U95 Set ... (see metadata) ( )
hgu95aprobe : Probe sequence data for microarrays of type hgu95a ( )
hgu95av2 : Affymetrix Human Genome U95 Set ... (see metadata) ( )
hgu95av2_db : Affymetrix Human Genome U95 Set ... (see metadata) ( )
hgu95av2probe : Probe sequence data for microarr... (see metadata) ( )
hgu95b_db : Affymetrix Human Genome U95 Set ... (see metadata) ( )
hgu95bprobe : Probe sequence data for microarrays of type hgu95b ( )
hgu95c_db : Affymetrix Human Genome U95 Set ... (see metadata) ( )
hgu95cprobe : Probe sequence data for microarrays of type hgu95c ( )
hgu95d_db : Affymetrix Human Genome U95 Set ... (see metadata) ( )
hgu95dprobe : Probe sequence data for microarrays of type hgu95d ( )
hgu95e_db : Affymetrix Human Genome U95 Set ... (see metadata) ( )
hgu95eprobe : Probe sequence data for microarrays of type hgu95e ( )
hguDKFZ31_db : Unknown annotation data (chip hguDKFZ31) ( )
hguatlas13k_db : Clontech BD Atlas Long Oligos Hu... (see metadata) ( )
hgug4100a_db : Agilent Human 1 cDNA Microarray ... (see metadata) ( )
hgug4101a_db : Agilent Human 2 cDNA Microarry K... (see metadata) ( )
hgug4110b_db : Agilent Human 1A (V2) annotation... (see metadata) ( )
hgug4111a_db : Agilent Human 1B annotation data (chip hgug4111a) ( )
hgug4112a_db : Agilent Human Genome, Whole anno... (see metadata) ( )
hgug4845a_db : agilent AMADID 026652 annotation... (see metadata) ( )
hguqiagenv3_db : Qiagen Qiagen V3.0 oligo set ann... (see metadata) ( )
hi16cod_db : Codelink Human Inflammation 16 B... (see metadata) ( )
hom_At_inp_db : Homology information for Arabido... (see metadata) ( )
hom_Ce_inp_db : Homology information for Caenorh... (see metadata) ( )
hom_Dm_inp_db : Homology information for Drosoph... (see metadata) ( )
hom_Dr_inp_db : Homology information for Danio r... (see metadata) ( )
hom_Hs_inp_db : Homology information for Homo Sa... (see metadata) ( )
hom_Mm_inp_db : Homology information for Mus mus... (see metadata) ( )
hom_Rn_inp_db : Homology information for Rattus ... (see metadata) ( )
hom_Sc_inp_db : Homology information for Sacchar... (see metadata) ( )
hs25kresogen_db : RNG_MRC Human Pangenomic 25k Set... (see metadata) ( )
htSeqTools : Quality Control, Visualization a... (see metadata) ( )
hthgu133a_db : Affymetrix HT Human Genome U133 ... (see metadata) ( )
hthgu133afrmavecs : Vectors used by frma for microar... (see metadata) ( )
hthgu133aprobe : Probe sequence data for microarr... (see metadata) ( )
hthgu133b_db : Affymetrix HT Human Genome U133 ... (see metadata) ( )
hthgu133bprobe : Probe sequence data for microarr... (see metadata) ( )
hthgu133pluspmprobe : Probe sequence data for microarr... (see metadata) ( )
htmg430aprobe : Probe sequence data for microarr... (see metadata) ( )
htmg430bprobe : Probe sequence data for microarr... (see metadata) ( )
htmg430pmprobe : Probe sequence data for microarr... (see metadata) ( )
htrat230pmprobe : Probe sequence data for microarr... (see metadata) ( )
htratfocusprobe : Probe sequence data for microarr... (see metadata) ( )
hu35ksuba_db : Affymetrix Human Genome HU35K Se... (see metadata) ( )
hu35ksubaprobe : Probe sequence data for microarr... (see metadata) ( )
hu35ksubb_db : Affymetrix Human Genome HU35K Se... (see metadata) ( )
hu35ksubbprobe : Probe sequence data for microarr... (see metadata) ( )
hu35ksubc_db : Affymetrix Human Genome HU35K Se... (see metadata) ( )
hu35ksubcprobe : Probe sequence data for microarr... (see metadata) ( )
hu35ksubd_db : Affymetrix Human Genome HU35K Se... (see metadata) ( )
hu35ksubdprobe : Probe sequence data for microarr... (see metadata) ( )
hu6800_db : Affymetrix HuGeneFL Genome Array... (see metadata) ( )
hu6800probe : Probe sequence data for microarrays of type hu6800 ( )
huex_1_0_st_v2frmavecs : Vectors used by frma for microar... (see metadata) ( )
hugene10stprobeset_db : Affymetrix Human Gene 1.0-ST Pro... (see metadata) ( )
hugene10sttranscriptcluster_db : Affymetrix Human Gene 1.0-ST Arr... (see metadata) ( )
hugene10stv1probe : Probe sequence data for microarr... (see metadata) ( )
hugene11stprobeset_db : Affymetrix Human Gene 1.1-ST Arr... (see metadata) ( )
hugene11sttranscriptcluster_db : Affymetrix Human Gene 1.1-ST Arr... (see metadata) ( )
hugene20stprobeset_db : Affymetrix hugene20 annotation d... (see metadata) ( )
hugene20sttranscriptcluster_db : Affymetrix hugene20 annotation d... (see metadata) ( )
hugene21stprobeset_db : Affymetrix hugene21 annotation d... (see metadata) ( )
hugene21sttranscriptcluster_db : Affymetrix hugene21 annotation d... (see metadata) ( )
hugene_1_0_st_v1frmavecs : Vectors used by frma for microar... (see metadata) ( )
human1mduov3bCrlmm : Metadata for fast genotyping wit... (see metadata) ( )
human1mv1cCrlmm : Metadata for fast genotyping wit... (see metadata) ( )
human370quadv3cCrlmm : Metadata for fast genotyping wit... (see metadata) ( )
human370v1cCrlmm : Metadata for fast genotyping wit... (see metadata) ( )
human550v3bCrlmm : Metadata for fast genotyping wit... (see metadata) ( )
human610quadv1bCrlmm : Metadata for fast genotyping wit... (see metadata) ( )
human650v3aCrlmm : Metadata for fast genotyping wit... (see metadata) ( )
human660quadv1aCrlmm : Metadata for fast genotyping wit... (see metadata) ( )
humanCHRLOC : A data package containing annota... (see metadata) ( )
humanStemCell : Human Stem Cells time course experiment ( )
humancytosnp12v2p1hCrlmm : Metadata for fast genotyping wit... (see metadata) ( )
humanomni1quadv1bCrlmm : Metadata for fast genotyping wit... (see metadata) ( )
humanomni25quadv1bCrlmm : Metadata for fast genotyping wit... (see metadata) ( )
humanomni5quadv1bCrlmm : Metadata for fast genotyping wit... (see metadata) ( )
humanomniexpress12v1bCrlmm : Metadata for fast genotyping wit... (see metadata) ( )
hwgcod_db : Codelink Human Whole Genome Bioa... (see metadata) ( )
hypergraph : A package providing hypergraph data structures ( )
illuminaHumanWGDASLv3_db : Illumina HumanHT12WGDASLv3 annot... (see metadata) ( )
illuminaHumanWGDASLv4_db : Illumina HumanWGDASLv4 annotatio... (see metadata) ( )
illuminaHumanv1_db : Illumina HumanWG6v1 annotation d... (see metadata) ( )
illuminaHumanv2BeadID_db : Illumina HumanWGv2 annotation da... (see metadata) ( )
illuminaHumanv2_db : Illumina HumanWG6v2 annotation d... (see metadata) ( )
illuminaHumanv3_db : Illumina HumanHT12v3 annotation ... (see metadata) ( )
illuminaHumanv4_db : Illumina HumanHT12v4 annotation ... (see metadata) ( )
illuminaMousev1_db : Illumina MouseWG6v1 annotation d... (see metadata) ( )
illuminaMousev1p1_db : Illumina MouseWG6v1p1 annotation... (see metadata) ( )
illuminaMousev2_db : Illumina MouseWG6v2 annotation d... (see metadata) ( )
illuminaRatv1_db : Illumina Ratv1 annotation data (... (see metadata) ( )
inSilicoMerging : Collection of Merging Techniques... (see metadata) ( )
interactiveDisplay : Package for enabling powerful sh... (see metadata) ( )
iontreeData : Data provided to show the usage ... (see metadata) ( )
iterativeBMA : The Iterative Bayesian Model Ave... (see metadata) ( )
iterativeBMAsurv : The Iterative Bayesian Model Ave... (see metadata) ( )
leeBamViews : leeBamViews -- multiple yeast RN... (see metadata) ( )
leukemiasEset : Leukemias microarray gene expres... (see metadata) ( )
lumiBarnes : Barnes Benchmark Illumina Tissues Titration Data ( )
lumiHumanAll_db : Illumina Human Illumina expressi... (see metadata) ( )
lumiHumanIDMapping : Illumina Identifier mapping for Human ( )
lumiMouseAll_db : Illumina Mouse Illumina expressi... (see metadata) ( )
lumiMouseIDMapping : Illumina Identifier mapping for Mouse ( )
lumiRatAll_db : Illumina Rat Illumina expression... (see metadata) ( )
lumiRatIDMapping : Illumina Identifier mapping for Rat ( )
lungExpression : ExpressionSets for Parmigiani et... (see metadata) ( )
m10kcod_db : Codelink UniSet Mouse I Bioarray... (see metadata) ( )
m20kcod_db : Codelink UniSet Mouse 20k I Bioa... (see metadata) ( )
maCorrPlot : Visualize artificial correlation... (see metadata) ( )
maPredictDSC : Phenotype prediction using micro... (see metadata) ( )
maigesPack : Functions to handle cDNA microar... (see metadata) ( )
maizeprobe : Probe sequence data for microarrays of type maize ( )
malaria_db0 : Base Level Annotation databases for malaria ( )
mammaPrintData : RGLists from the Glas and Buyse ... (see metadata) ( )
maqcExpression4plex : Sample Expression Data - MAQC / HG18 - NimbleGen ( )
matchBox : Utilities to compute, compare, a... (see metadata) ( )
medicagoprobe : Probe sequence data for microarr... (see metadata) ( )
metagenomeSeq : Statistical analysis for sparse ... (see metadata) ( )
methVisual : Methods for visualization and st... (see metadata) ( )
methyAnalysis : DNA methylation data analysis and visualization ( )
mgu74a_db : Affymetrix Murine Genome U74v2 a... (see metadata) ( )
mgu74aprobe : Probe sequence data for microarrays of type mgu74a ( )
mgu74av2_db : Affymetrix Murine Genome U74v2 a... (see metadata) ( )
mgu74av2probe : Probe sequence data for microarr... (see metadata) ( )
mgu74b_db : Affymetrix Murine Genome U74v2 a... (see metadata) ( )
mgu74bprobe : Probe sequence data for microarrays of type mgu74b ( )
mgu74bv2_db : Affymetrix Murine Genome U74v2 a... (see metadata) ( )
mgu74bv2probe : Probe sequence data for microarr... (see metadata) ( )
mgu74c_db : Affymetrix Murine Genome U74v2 a... (see metadata) ( )
mgu74cprobe : Probe sequence data for microarrays of type mgu74c ( )
mgu74cv2_db : Affymetrix Murine Genome U74v2 a... (see metadata) ( )
mgu74cv2probe : Probe sequence data for microarr... (see metadata) ( )
mguatlas5k_db : Clontech BD Atlas Long Oligos Mo... (see metadata) ( )
mgug4104a_db : Agilent annotation data (chip mgug4104a) ( )
mgug4120a_db : Agilent annotation data (chip mgug4120a) ( )
mgug4121a_db : Agilent Mouse annotation data (chip mgug4121a) ( )
mgug4122a_db : Agilent Mouse Genome, Whole anno... (see metadata) ( )
mi16cod_db : Codelink Mouse Inflammation 16 B... (see metadata) ( )
miRNATarget : gene target tabale of miRNA for ... (see metadata) ( )
miRNApath : miRNApath: Pathway Enrichment fo... (see metadata) ( )
minfiData : Example data for the Illumina Me... (see metadata) ( )
mirna10probe : Probe sequence data for microarr... (see metadata) ( )
mm24kresogen_db : RNG_MRC Mouse Pangenomic 24k Set... (see metadata) ( )
moe430a_db : Affymetrix Mouse Expression Set ... (see metadata) ( )
moe430aprobe : Probe sequence data for microarr... (see metadata) ( )
moe430b_db : Affymetrix Mouse Expression Set ... (see metadata) ( )
moe430bprobe : Probe sequence data for microarr... (see metadata) ( )
mogene10stprobeset_db : Affymetrix Mouse Gene 1.0-ST Arr... (see metadata) ( )
mogene10sttranscriptcluster_db : Affymetrix Mouse Gene 1.0-ST Arr... (see metadata) ( )
mogene10stv1probe : Probe sequence data for microarr... (see metadata) ( )
mogene11stprobeset_db : Affymetrix Mouse Gene 1.1-ST Arr... (see metadata) ( )
mogene11sttranscriptcluster_db : Affymetrix Mouse Gene 1.1-ST Arr... (see metadata) ( )
mogene20stprobeset_db : Affymetrix mogene20 annotation d... (see metadata) ( )
mogene20sttranscriptcluster_db : Affymetrix mogene20 annotation d... (see metadata) ( )
mogene21stprobeset_db : Affymetrix mogene21 annotation d... (see metadata) ( )
mogene21sttranscriptcluster_db : Affymetrix mogene21 annotation d... (see metadata) ( )
mogene_1_0_st_v1frmavecs : Vectors used by frma for microar... (see metadata) ( )
mosaicsExample : Example data for the mosaics pac... (see metadata) ( )
motifStack : Plot stacked logos for single or... (see metadata) ( )
mouse4302_db : Affymetrix Mouse Genome 430 2.0 ... (see metadata) ( )
mouse4302barcodevecs : mouse4302 data for barcode ( )
mouse4302frmavecs : Vectors used by frma for microar... (see metadata) ( )
mouse4302probe : Probe sequence data for microarr... (see metadata) ( )
mouse430a2_db : Affymetrix Mouse Genome 430A 2.0... (see metadata) ( )
mouse430a2frmavecs : Vectors used by frma for microar... (see metadata) ( )
mouse430a2probe : Probe sequence data for microarr... (see metadata) ( )
mouseCHRLOC : A data package containing annota... (see metadata) ( )
mpedbarray_db : FHCRC Nelson Lab mpedbarray Anno... (see metadata) ( )
mu11ksuba_db : Affymetrix Murine 11K Set annota... (see metadata) ( )
mu11ksubaprobe : Probe sequence data for microarr... (see metadata) ( )
mu11ksubb_db : Affymetrix Murine 11K Set annota... (see metadata) ( )
mu11ksubbprobe : Probe sequence data for microarr... (see metadata) ( )
mu19ksuba_db : Affymetrix Murine Genome 19k Set... (see metadata) ( )
mu19ksubb_db : Affymetrix Murine Genome 19k Set... (see metadata) ( )
mu19ksubc_db : Affymetrix Murine Genome 19k Set... (see metadata) ( )
mvoutData : affy and illumina raw data for a... (see metadata) ( )
mwgcod_db : Codelink Mouse Whole Genome Bioa... (see metadata) ( )
networkBMA : Regression-based network inferen... (see metadata) ( )
nugohs1a520180_db : Affymetrix nugohs1a520180 annota... (see metadata) ( )
nugohs1a520180probe : Probe sequence data for microarr... (see metadata) ( )
nugomm1a520177_db : Affymetrix nugomm1a520177 annota... (see metadata) ( )
nugomm1a520177probe : Probe sequence data for microarr... (see metadata) ( )
oligoClasses : Classes for high-throughput arra... (see metadata) ( )
org_At_tair_db : Genome wide annotation for Arabidopsis ( )
org_EcK12_eg_db : Genome wide annotation for E coli strain K12 ( )
org_EcSakai_eg_db : Genome wide annotation for E coli strain Sakai ( )
org_Hs_ipi_db : A data package containing annota... (see metadata) ( )
org_Pf_plasmo_db : Genome wide annotation for Malaria ( )
org_Sco_eg_db : Genome wide annotation for Streptomyces coelicolor ( )
org_Tgondii_eg_db : Genome wide annotation for Toxoplasma gondii ( )
paeg1aprobe : Probe sequence data for microarrays of type paeg1a ( )
parathyroid : RNA-Seq data of primary cultures... (see metadata) ( )
parathyroidSE : SummarizedExperiment for RNA-Seq... (see metadata) ( )
pasillaBamSubset : Subset of BAM files from Pasilla experiment ( )
pcaGoPromoter : pcaGoPromoter is used to analyze... (see metadata) ( )
pcaGoPromoter_Hs_hg19 : pcaGoPromoter.Hs.hg19 is a data ... (see metadata) ( )
pcaGoPromoter_Mm_mm9 : pcaGoPromoter.Mm.mm9 is a data p... (see metadata) ( )
pcaGoPromoter_Rn_rn4 : pcaGoPromoter.Rn.rn4 is a data p... (see metadata) ( )
pdInfoBuilder : Platform Design Information Package Builder ( )
pd_081229_hg18_promoter_medip_hx1 : Platform Design Info for NimbleG... (see metadata) ( )
pd_2006_07_18_hg18_refseq_promoter : Platform Design Info for NimbleG... (see metadata) ( )
pd_2006_07_18_mm8_refseq_promoter : Platform Design Info for NimbleG... (see metadata) ( )
pd_2006_10_31_rn34_refseq_promoter : Platform Design Info for NimbleG... (see metadata) ( )
pd_aragene_1_0_st : Platform Design Info for Affymetrix AraGene-1_0-st ( )
pd_aragene_1_1_st : Platform Design Info for Affymetrix AraGene-1_1-st ( )
pd_atdschip_tiling : Platform Design Info for Affymet... (see metadata) ( )
pd_ath1_121501 : Platform Design Info for The Man... (see metadata) ( )
pd_barley1 : Platform Design Info for The Man... (see metadata) ( )
pd_bovgene_1_0_st : Platform Design Info for Affymetrix BovGene-1_0-st ( )
pd_bovgene_1_1_st : Platform Design Info for Affymetrix BovGene-1_1-st ( )
pd_bovine : Platform Design Info for The Man... (see metadata) ( )
pd_bsubtilis : Platform Design Info for The Man... (see metadata) ( )
pd_cangene_1_0_st : Platform Design Info for Affymetrix CanGene-1_0-st ( )
pd_cangene_1_1_st : Platform Design Info for Affymetrix CanGene-1_1-st ( )
pd_canine : Platform Design Info for The Man... (see metadata) ( )
pd_canine_2 : Platform Design Info for The Man... (see metadata) ( )
pd_celegans : Platform Design Info for The Man... (see metadata) ( )
pd_charm_hg18_example : Platform Design Info for NimbleG... (see metadata) ( )
pd_chicken : Platform Design Info for The Man... (see metadata) ( )
pd_citrus : Platform Design Info for The Man... (see metadata) ( )
pd_cotton : Platform Design Info for The Man... (see metadata) ( )
pd_cyngene_1_0_st : Platform Design Info for Affymetrix CynGene-1_0-st ( )
pd_cyngene_1_1_st : Platform Design Info for Affymetrix CynGene-1_1-st ( )
pd_cyrgene_1_0_st : Platform Design Info for Affymetrix CyRGene-1_0-st ( )
pd_cyrgene_1_1_st : Platform Design Info for Affymetrix CyRGene-1_1-st ( )
pd_cytogenetics_array : Platform Design Info for Affymet... (see metadata) ( )
pd_drosgenome1 : Platform Design Info for The Man... (see metadata) ( )
pd_drosophila_2 : Platform Design Info for The Man... (see metadata) ( )
pd_e_coli_2 : Platform Design Info for The Man... (see metadata) ( )
pd_ecoli_asv2 : Platform Design Info for The Man... (see metadata) ( )
pd_equgene_1_0_st : Platform Design Info for Affymetrix EquGene-1_0-st ( )
pd_equgene_1_1_st : Platform Design Info for Affymetrix EquGene-1_1-st ( )
pd_feinberg_hg18_me_hx1 : Platform Design Info for NimbleG... (see metadata) ( )
pd_feinberg_mm8_me_hx1 : Platform Design Info for NimbleG... (see metadata) ( )
pd_felgene_1_0_st : Platform Design Info for Affymetrix FelGene-1_0-st ( )
pd_felgene_1_1_st : Platform Design Info for Affymetrix FelGene-1_1-st ( )
pd_genomewidesnp_5 : Platform Design Info for Affymet... (see metadata) ( )
pd_genomewidesnp_6 : Platform Design Info for Affymet... (see metadata) ( )
pd_hc_g110 : Platform Design Info for The Man... (see metadata) ( )
pd_hg18_60mer_expr : Platform Design Info for NimbleGen hg18_60mer_expr ( )
pd_hg_focus : Platform Design Info for The Man... (see metadata) ( )
pd_hg_u133_plus_2 : Platform Design Info for The Man... (see metadata) ( )
pd_hg_u133a : Platform Design Info for The Man... (see metadata) ( )
pd_hg_u133a_2 : Platform Design Info for The Man... (see metadata) ( )
pd_hg_u133a_tag : Platform Design Info for The Man... (see metadata) ( )
pd_hg_u133b : Platform Design Info for The Man... (see metadata) ( )
pd_hg_u219 : Platform Design Info for The Man... (see metadata) ( )
pd_hg_u95a : Platform Design Info for The Man... (see metadata) ( )
pd_hg_u95av2 : Platform Design Info for The Man... (see metadata) ( )
pd_hg_u95b : Platform Design Info for The Man... (see metadata) ( )
pd_hg_u95c : Platform Design Info for The Man... (see metadata) ( )
pd_hg_u95d : Platform Design Info for The Man... (see metadata) ( )
pd_hg_u95e : Platform Design Info for The Man... (see metadata) ( )
pd_ht_hg_u133_plus_pm : Platform Design Info for The Man... (see metadata) ( )
pd_ht_hg_u133a : Platform Design Info for The Man... (see metadata) ( )
pd_ht_mg_430a : Platform Design Info for The Man... (see metadata) ( )
pd_hu6800 : Platform Design Info for The Man... (see metadata) ( )
pd_huex_1_0_st_v2 : Platform Design Info for Affymetrix HuEx-1_0-st-v2 ( )
pd_hugene_1_0_st_v1 : Platform Design Info for Affymet... (see metadata) ( )
pd_hugene_1_1_st_v1 : Platform Design Info for Affymet... (see metadata) ( )
pd_hugene_2_0_st : Platform Design Info for Affymetrix HuGene-2_0-st ( )
pd_hugene_2_1_st : Platform Design Info for Affymetrix HuGene-2_1-st ( )
pd_mapping250k_nsp : Platform Design Info for Affymet... (see metadata) ( )
pd_mapping250k_sty : Platform Design Info for Affymet... (see metadata) ( )
pd_mapping50k_hind240 : Platform Design Info for Affymet... (see metadata) ( )
pd_mapping50k_xba240 : Platform Design Info for Affymet... (see metadata) ( )
pd_medicago : Platform Design Info for The Man... (see metadata) ( )
pd_mg_u74a : Platform Design Info for The Man... (see metadata) ( )
pd_mg_u74av2 : Platform Design Info for The Man... (see metadata) ( )
pd_mg_u74b : Platform Design Info for The Man... (see metadata) ( )
pd_mg_u74bv2 : Platform Design Info for The Man... (see metadata) ( )
pd_mg_u74c : Platform Design Info for The Man... (see metadata) ( )
pd_mg_u74cv2 : Platform Design Info for The Man... (see metadata) ( )
pd_mirna_1_0 : Platform Design Info for The Man... (see metadata) ( )
pd_mirna_2_0 : Platform Design Info for Affymetrix miRNA-2_0 ( )
pd_mirna_3_0 : Platform Design Info for Affymetrix miRNA-3_0 ( )
pd_mirna_3_1 : Platform Design Info for Affymetrix miRNA-3_1 ( )
pd_moe430a : Platform Design Info for The Man... (see metadata) ( )
pd_moe430b : Platform Design Info for The Man... (see metadata) ( )
pd_moex_1_0_st_v1 : Platform Design Info for Affymetrix MoEx-1_0-st-v1 ( )
pd_mogene_1_0_st_v1 : Platform Design Info for Affymet... (see metadata) ( )
pd_mogene_1_1_st_v1 : Platform Design Info for Affymet... (see metadata) ( )
pd_mogene_2_0_st : Platform Design Info for Affymetrix MoGene-2_0-st ( )
pd_mogene_2_1_st : Platform Design Info for Affymetrix MoGene-2_1-st ( )
pd_mouse430_2 : Platform Design Info for The Man... (see metadata) ( )
pd_mouse430a_2 : Platform Design Info for The Man... (see metadata) ( )
pd_mu11ksuba : Platform Design Info for The Man... (see metadata) ( )
pd_mu11ksubb : Platform Design Info for The Man... (see metadata) ( )
pd_ovigene_1_0_st : Platform Design Info for Affymetrix OviGene-1_0-st ( )
pd_ovigene_1_1_st : Platform Design Info for Affymetrix OviGene-1_1-st ( )
pd_pae_g1a : Platform Design Info for The Man... (see metadata) ( )
pd_plasmodium_anopheles : Platform Design Info for The Man... (see metadata) ( )
pd_poplar : Platform Design Info for The Man... (see metadata) ( )
pd_porcine : Platform Design Info for The Man... (see metadata) ( )
pd_porgene_1_0_st : Platform Design Info for Affymetrix PorGene-1_0-st ( )
pd_porgene_1_1_st : Platform Design Info for Affymetrix PorGene-1_1-st ( )
pd_rae230a : Platform Design Info for The Man... (see metadata) ( )
pd_rae230b : Platform Design Info for The Man... (see metadata) ( )
pd_raex_1_0_st_v1 : Platform Design Info for Affymetrix RaEx-1_0-st-v1 ( )
pd_ragene_1_0_st_v1 : Platform Design Info for Affymet... (see metadata) ( )
pd_ragene_1_1_st_v1 : Platform Design Info for Affymet... (see metadata) ( )
pd_ragene_2_0_st : Platform Design Info for Affymetrix RaGene-2_0-st ( )
pd_ragene_2_1_st : Platform Design Info for Affymetrix RaGene-2_1-st ( )
pd_rat230_2 : Platform Design Info for The Man... (see metadata) ( )
pd_rcngene_1_1_st : Platform Design Info for Affymetrix RCnGene-1_1-st ( )
pd_rg_u34a : Platform Design Info for The Man... (see metadata) ( )
pd_rg_u34b : Platform Design Info for The Man... (see metadata) ( )
pd_rg_u34c : Platform Design Info for The Man... (see metadata) ( )
pd_rhegene_1_0_st : Platform Design Info for Affymetrix RheGene-1_0-st ( )
pd_rhegene_1_1_st : Platform Design Info for Affymetrix RheGene-1_1-st ( )
pd_rhesus : Platform Design Info for The Man... (see metadata) ( )
pd_rjpgene_1_1_st : Platform Design Info for Affymetrix RJpGene-1_1-st ( )
pd_rn_u34 : Platform Design Info for The Man... (see metadata) ( )
pd_s_aureus : Platform Design Info for The Man... (see metadata) ( )
pd_soybean : Platform Design Info for The Man... (see metadata) ( )
pd_soygene_1_1_st : Platform Design Info for Affymetrix SoyGene-1_1-st ( )
pd_sugar_cane : Platform Design Info for The Man... (see metadata) ( )
pd_tomato : Platform Design Info for The Man... (see metadata) ( )
pd_u133_x3p : Platform Design Info for The Man... (see metadata) ( )
pd_vitis_vinifera : Platform Design Info for The Man... (see metadata) ( )
pd_x_laevis_2 : Platform Design Info for The Man... (see metadata) ( )
pd_x_tropicalis : Platform Design Info for The Man... (see metadata) ( )
pd_xenopus_laevis : Platform Design Info for The Man... (see metadata) ( )
pd_yeast_2 : Platform Design Info for The Man... (see metadata) ( )
pd_yg_s98 : Platform Design Info for The Man... (see metadata) ( )
pd_zebgene_1_0_st : Platform Design Info for Affymetrix ZebGene-1_0-st ( )
pd_zebgene_1_1_st : Platform Design Info for Affymetrix ZebGene-1_1-st ( )
pd_zebrafish : Platform Design Info for The Man... (see metadata) ( )
pdmclass : Classification of Microarray Sam... (see metadata) ( )
pedbarrayv10_db : FHCRC Nelson Lab pedbarrayv10 An... (see metadata) ( )
pedbarrayv9_db : FHCRC Nelson Lab pedbarrayv9 Ann... (see metadata) ( )
phenoTest : Tools to test association betwee... (see metadata) ( )
pickgene : Adaptive Gene Picking for Microa... (see metadata) ( )
plasmodiumanophelescdf : plasmodiumanophelescdf ( )
plasmodiumanophelesprobe : Probe sequence data for microarr... (see metadata) ( )
plateCore : Statistical tools and data struc... (see metadata) ( )
poplarprobe : Probe sequence data for microarrays of type poplar ( )
porcine_db : Affymetrix porcine annotation data (chip porcine) ( )
porcineprobe : Probe sequence data for microarr... (see metadata) ( )
predictionet : Inference for predictive network... (see metadata) ( )
preprocessCore : A collection of pre-processing functions ( )
primeviewprobe : Probe sequence data for microarr... (see metadata) ( )
quantsmooth : Quantile smoothing and genomic v... (see metadata) ( )
r10kcod_db : Codelink UniSet Rat I Bioarray (... (see metadata) ( )
rBiopaxParser : Parses BioPax files and represents them in R ( )
rSFFreader : rSFFreader reads in sff files ge... (see metadata) ( )
rae230a_db : Affymetrix Rat Expression Set 23... (see metadata) ( )
rae230aprobe : Probe sequence data for microarr... (see metadata) ( )
rae230b_db : Affymetrix Rat Expression Set 23... (see metadata) ( )
rae230bprobe : Probe sequence data for microarr... (see metadata) ( )
ragene10stprobeset_db : Affymetrix Rat Gene 1.0-ST Array... (see metadata) ( )
ragene10sttranscriptcluster_db : Affymetrix Rat Gene 1.0-ST Array... (see metadata) ( )
ragene10stv1probe : Probe sequence data for microarr... (see metadata) ( )
ragene11stprobeset_db : Affymetrix Rat Gene 1.1-ST Array... (see metadata) ( )
ragene11sttranscriptcluster_db : Affymetrix Rat Gene 1.1-ST Array... (see metadata) ( )
ragene20stprobeset_db : Affymetrix ragene20 annotation d... (see metadata) ( )
ragene20sttranscriptcluster_db : Affymetrix ragene20 annotation d... (see metadata) ( )
ragene21stprobeset_db : Affymetrix ragene21 annotation d... (see metadata) ( )
ragene21sttranscriptcluster_db : Affymetrix ragene21 annotation d... (see metadata) ( )
rat2302_db : Affymetrix Rat Genome 230 2.0 Ar... (see metadata) ( )
rat2302probe : Probe sequence data for microarr... (see metadata) ( )
ratCHRLOC : A data package containing annota... (see metadata) ( )
rattoxfxprobe : Probe sequence data for microarr... (see metadata) ( )
rgu34a_db : Affymetrix Rat Genome U34 Set an... (see metadata) ( )
rgu34aprobe : Probe sequence data for microarrays of type rgu34a ( )
rgu34b_db : Affymetrix Rat Genome U34 Set an... (see metadata) ( )
rgu34bprobe : Probe sequence data for microarrays of type rgu34b ( )
rgu34c_db : Affymetrix Rat Genome U34 Set an... (see metadata) ( )
rgu34cprobe : Probe sequence data for microarrays of type rgu34c ( )
rguatlas4k_db : Clontech BD Atlas Long Oligos Ra... (see metadata) ( )
rgug4105a_db : Agilent annotation data (chip rgug4105a) ( )
rgug4130a_db : Agilent Rat annotation data (chip rgug4130a) ( )
rgug4131a_db : Agilent Rat Genome, Whole annota... (see metadata) ( )
rhesusprobe : Probe sequence data for microarrays of type rhesus ( )
rheumaticConditionWOLLBOLD : Normalized gene expression datas... (see metadata) ( )
ri16cod_db : Codelink Rat Inflammation 16 Bio... (see metadata) ( )
rnu34probe : Probe sequence data for microarrays of type rnu34 ( )
rtracklayer : R interface to genome browsers a... (see metadata) ( )
rtu34probe : Probe sequence data for microarrays of type rtu34 ( )
rwgcod_db : Codelink Rat Whole Genome Bioarr... (see metadata) ( )
sagenhaft : Collection of functions for read... (see metadata) ( )
saureusprobe : Probe sequence data for microarr... (see metadata) ( )
segmentSeq : Methods for identifying small RN... (see metadata) ( )
seqCNA_annot : Annotation for the copy number a... (see metadata) ( )
serumStimulation : serumStimulation is a data packa... (see metadata) ( )
seventyGeneData : ExpressionSets from the vant Vee... (see metadata) ( )
simpIntLists : The package contains BioGRID int... (see metadata) ( )
simpleaffy : Very simple high level analysis of Affymetrix data ( )
sizepower : Sample Size and Power Calculatio... (see metadata) ( )
soybeanprobe : Probe sequence data for microarr... (see metadata) ( )
spliceSites : Manages align gap positions from RNA-seq data ( )
spotSegmentation : Microarray Spot Segmentation and... (see metadata) ( )
stemHypoxia : Differentiation of Human Embryon... (see metadata) ( )
stepNorm : Stepwise normalization functions... (see metadata) ( )
stepwiseCM : Stepwise Classification of Cance... (see metadata) ( )
sugarcaneprobe : Probe sequence data for microarr... (see metadata) ( )
supraHex : A supra-hexagonal map for analys... (see metadata) ( )
synapterdata : Data accompanying the synapter package ( )
tRanslatome : Comparison between multiple leve... (see metadata) ( )
targetscan_Hs_eg_db : TargetScan miRNA target predictions for human ( )
targetscan_Mm_eg_db : TargetScan miRNA target predictions for mouse ( )
test3probe : Probe sequence data for microarrays of type test3 ( )
tilingArray : Transcript mapping with high-den... (see metadata) ( )
timecourse : Statistical Analysis for Develop... (see metadata) ( )
tinesath1probe : Probe sequence data for microarr... (see metadata) ( )
tomatoprobe : Probe sequence data for microarrays of type tomato ( )
tweeDEseq : RNA-seq data analysis using the ... (see metadata) ( )
tweeDEseqCountData : RNA-seq count data employed in t... (see metadata) ( )
u133x3p_db : Affymetrix Human X3P Array annot... (see metadata) ( )
u133x3pprobe : Probe sequence data for microarr... (see metadata) ( )
virtualArray : Build virtual array from differe... (see metadata) ( )
vitisviniferaprobe : Probe sequence data for microarr... (see metadata) ( )
wateRmelon : Illumina 450 methylation array n... (see metadata) ( )
waveTiling : Wavelet-Based Models for Tiling ... (see metadata) ( )
wheatprobe : Probe sequence data for microarrays of type wheat ( )
xenopus_db0 : Base Level Annotation databases for xenopus ( )
xenopuslaevisprobe : Probe sequence data for microarr... (see metadata) ( )
xlaevis2probe : Probe sequence data for microarr... (see metadata) ( )
xlaevis_db : Affymetrix Xenopus laevis annota... (see metadata) ( )
xmapbridge : Export plotting files to the xma... (see metadata) ( )
xtropicalisprobe : Probe sequence data for microarr... (see metadata) ( )
yeast2_db : Affymetrix Yeast Genome 2.0 Arra... (see metadata) ( )
yeast2probe : Probe sequence data for microarrays of type yeast2 ( )
yeastNagalakshmi : Yeast genome RNA sequencing data... (see metadata) ( )
yeastRNASeq : Yeast RNA-Seq Experimental Data ... (see metadata) ( )
ygs98frmavecs : Vectors used by frma for microarrays of type ygs98 ( )
ygs98probe : Probe sequence data for microarrays of type ygs98 ( )
zebrafish_db : Affymetrix zebrafish annotation ... (see metadata) ( )
zebrafish_db0 : Base Level Annotation databases for zebrafish ( )
zebrafishprobe : Probe sequence data for microarr... (see metadata) ( )
Add an ebuild in portage :
The ebuild is now in the portage tree.
You can also use layman : emerge layman then layman -a roverlay
For Paludis use this rsync : rsync://gentoo.zugaina.org/roverlay-portage
If you have a problem : ycarus(-at-)zugaina.org