Ycarus Gentoo ebuild

science

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dev-python

Forthon : Python interface generator for Fortran based codes ( https://github.com/dpgrote/Forthon )

POT : Python Optimal Transport Library ( https://github.com/PythonOT/POT )

PeakUtils : Peak detection utilities for 1D data ( https://bitbucket.org/lucashnegri/peakutils )

affine : Library for handling affine transformations of the plane ( https://github.com/rasterio/affine )

amply : Allows you to load and manipulate AMPL/GLPK data as Python data structures ( https://github.com/willu47/amply/ )

annexremote : Helper module to easily develop git-annex remotes ( https://github.com/Lykos153/AnnexRemote )

anys : Matchers for pytest ( https://github.com/jwodder/anys )

arrayfire-python : Python bindings for ArrayFire ( http://www.arrayfire.com )

asciitree : ASCII trees in python ( https://github.com/mbr/asciitree )

asdf : Python library for the Advanced Scientific Data Format ( https://asdf.readthedocs.io/en/latest/ )

astropy : Core functionality for performing astrophysics with Python ( https://astropy.org/ )

astropy-healpix : HEALPix for Astropy ( https://github.com/astropy/astropy-healpix )

astropy-helpers : Helpers for Astropy and Affiliated packages ( https://github.com/astropy/astropy-helpers )

astropy-sphinx-theme : The sphinx theme for Astropy and affiliated packages ( https://github.com/astropy/astropy-sphinx-theme )

astroquery : A collection of packages to access online astronomical resources ( https://www.astropy.org/astroquery/ )

astroscrappy : Speedy Cosmic Ray Annihilation Package in Python ( https://github.com/astropy/astroscrappy )

av : Pythonic bindings for FFmpeg's libraries. ( https://github.com/mikeboers/PyAV https://pypi.org/project/av/ )

bcbio-gff : Read and write Generic Feature Format (GFF) with Biopython ( https://pypi.python.org/pypi/bcbio-gff )

bokeh : Statistical and interactive HTML plots for Python ( https://bokeh.org/ )

bz2file : Read and write bzip2-compressed files ( https://github.com/nvawda/bz2file )

cadquery : Python parametric CAD scripting framework based on OCCT ( https://cadquery.readthedocs.io )

cadquery-ocp : Python wrapper for OCCT generated using pywrap ( https://github.com/CadQuery/OCP )

cadquery-pywrap : C++ binding generator based on libclang and pybind11 ( https://github.com/CadQuery/pywrap )

ccdproc : Astropy affiliated package for reducing optical/IR CCD data ( https://github.com/astropy/ccdproc )

click-didyoumean : Enable git-like did-you-mean feature in click ( https://github.com/click-contrib/click-didyoumean )

cligj : Library for processing GeoJSON commands ( https://github.com/mapbox/cligj )

colorcet : Collection of perceptually uniform colormaps ( https://holoviz.org )

colorlover : color scales in python for humans ( https://github.com/plotly/colorlover )

cymbal : Add functionality missing from the python libclang bindings ( https://pypi.org/project/cymbal )

dandi-schema : Schemata for DANDI archive project ( https://github.com/dandi/dandi-schema )

datrie : Implements a topological sort algorithm ( https://github.com/pytries/datrie )

delegator : Subprocesses for Humans 2.0. ( https://github.com/amitt001/delegator.py )

dijitso : Python module for distributed just-in-time shared library building ( https://bitbucket.org/fenics-project/dijitso/ )

dnaio : efficient reader for FASTA and FASTQ files ( https://pypi.python.org/pypi/xopen )

extension-helpers : Utilities for building and installing packages in the Astropy ecosystem ( https://github.com/astropy/astropy-helpers )

ezdxf : Python interface to DXF ( https://pypi.org/project/ezdxf )

ffc : Compiler for multilinear forms by generating C or C++ code ( https://bitbucket.org/fenics-project/ffc/ )

fiat : FInite element Automatic Tabulator ( https://github.com/FEniCS/fiat )

fiona : API for reading/writing vector geospatial data ( https://github.com/Toblerity/fiona )

fscacher : Cache results of operations on heavy file trees ( https://github.com/con/fscacher )

fslpy : The FSL Python Library ( https://git.fmrib.ox.ac.uk/fsl/fslpy )

gammapy : A Python package for gamma-ray astronomy ( https://github.com/gammapy/gammapy )

geopandas : Python tools for geographic data ( https://github.com/geopandas/geopandas )

gffpandas : Python library to Filter and sort GFF3 annotations ( https://github.com/foerstner-lab/gffpanda )

gmsh_interop : Interoperability with Gmsh for Python ( https://github.com/inducer/gmsh_interop/ )

grabbit : Get grabby with file trees ( https://github.com/grabbles/grabbit )

gwcs : Generalized World Coordinate System ( https://gwcs.readthedocs.io/en/latest/ )

hdf5storage : Read/write Python types to/from HDF5 files, including MATLAB v7.3 MAT files ( https://github.com/frejanordsiek/hdf5storage )

hdmf : The Hierarchical Data Modeling Framework ( https://github.com/hdmf-dev/hdmf )

holoviews : Make data analysis and visualization seamless and simple ( https://holoviews.org )

hopcroftkarp : python frontend for the fast ripser tda tool ( https://ripser.scikit-tda.org/ )

imageutils : Various utilities for working with images ( https://pypi.org/project/imageutils/ )

interleave : Yield from multiple iterators as values become available ( https://github.com/jwodder/interleave )

json_tricks : Extra features for Python's JSON ( https://github.com/mverleg/pyjson_tricks )

jupyterlab_launcher : Jupyter Launcher ( https://jupyter.org/ )

keyrings_alt : Alternate keyring backend implementations used with dev-python/keyring ( https://github.com/jaraco/keyrings.alt/ )

kmapper : Python implementation of Mapper algorithm for Topological Data Analysis ( https://kepler-mapper.scikit-tda.org )

llvmlite : Python wrapper around the llvm C++ library ( https://llvmlite.pydata.org/ )

logzero : Robust and effective logging for Python 2 and 3 ( https://pypi.org/project/logzero )

matrix2latex : A tool to create LaTeX tables from python lists and arrays ( https://github.com/TheChymera/matrix2latex )

meshpy : Quality triangular and tetrahedral mesh generation for Python ( https://mathema.tician.de/software/meshp )

num2words : Modules to convert numbers to words. ( https://github.com/savoirfairelinux/num2words )

numba : NumPy aware dynamic Python compiler using LLVM ( https://numba.pydata.org )

numcodecs : Data storage buffer compression and transformation codecs ( https://github.com/zarr-developers/numcodecs )

nwbinspector : Inspect NWB files for compliance with NWB Best Practices ( https://github.com/NeurodataWithoutBorders/nwbinspector )

palettable : library of color palettes for python ( https://github.com/jiffyclub/palettable )

panel : High-level app and dashboarding solution for Python ( https://panel.holoviz.org )

param : Make Python code clearer and more reliable by declaring Parameters ( https://param.holoviz.org )

persim : Distances and representations of persistence diagrams ( https://persim.scikit-tda.org/ )

photutils : Affiliated package for image photometry utilities ( https://github.com/astropy/photutils )

py2bit : Python library for accessing 2bit files ( https://github.com/dpryan79/py2bit )

pyBigWig : quick access to and creation of bigWig files ( https://github.com/dpryan79/pyBigWig )

pybind11-stubgen : PEP 561 type stubs generator for pybind11 modules ( https://github.com/sizmailov/pybind11-stubgen )

pyct : Python packaging Common Tasks ( https://holoviz.org )

pyerfa : Python bindings for ERFA ( https://github.com/liberfa/pyerfa/ )

pynndescent : nearest neighbor descent for approximate nearest neighbors ( https://github.com/lmcinnes/pynndescent )

pynrrd : Simple pure-python module for reading and writing nrrd files ( https://github.com/mhe/pynrrd )

pynwb : A Python API for working with Neurodata stored in the NWB Format ( https://github.com/NeurodataWithoutBorders/pynwb )

pyout : Terminal styling for structured data ( https://github.com/pyout/pyout )

pyparsing : Easy-to-use Python module for text parsing ( https://github.com/pyparsing/pyparsing https://pypi.org/project/pyparsing/ )

pysolar : Collection of Python libraries for simulating the irradiation by the sun ( https://pysolar.org/ )

pytest-doctestplus : Pytest plugin with advanced doctest features ( https://astropy.org/ )

python-gantt : Draw Gantt charts from Python ( https://pypi.org/project/python-gantt/ )

python-igraph : Python interface for igraph ( https://igraph.org )

python-vxi11 : Provides a pure Python VXI-11 driver for controlling instruments over Ethernet ( https://github.com/python-ivi/python-vxi11 )

pytorch-lightning : Lightweight PyTorch wrapper for ML researchers ( https://github.com/PyTorchLightning/pytorch-lightning )

pyvista : Easier Pythonic interface to VTK ( https://docs.pyvista.org )

pyviz_comms : Bidirectional communication for the HoloViz ecosystem ( https://holoviz.org )

pyvote : Estimate the probability of votes changing election outcomes ( https://github.com/TheChymera/pyvote.git )

pyzo : The Python IDE for scientific computing ( https://pyzo.org/ )

rasterio : Command line tool and API for geospatial raster data ( https://github.com/rasterio/rasterio )

rasterstats : Python module for summarizing geospatial raster datasets based on vectors ( https://github.com/perrygeo/python-rasterstats )

regions : Astropy affilated package for region handling ( https://github.com/astropy/regions )

reproject : Reproject astronomical images ( https://reproject.readthedocs.io/ )

repsep_utils : Utilities Supporting RepSeP-style documents ( https://github.com/TheChymera/repsep_utils )

ripser : python frontend for the fast ripser tda tool ( https://ripser.scikit-tda.org/ )

schema : Schema validation just got Pythonic ( https://pypi.org/project/schema )

scooby : Easily report Python package versions and hardware resources ( https://pypi.org/project/scooby )

snakemake : Make-like task language ( https://snakemake.readthedocs.io )

snuggs : S-expressions for numpy ( https://github.com/mapbox/snuggs )

specutils : Package for spectroscopic astronomical data ( https://github.com/astropy/specutils )

sphinx-argparse : Sphinx extension that automatically documents argparse commands and options ( https://pypi.org/project/sphinx-argparse )

sphinx-astropy : Sphinx extensions and configuration specific to the Astropy project ( https://astropy.org/ )

sphinx-automodapi : Sphinx extension for auto-generating API documentation for entire modules ( https://astropy.org/ )

sphinxcontrib-napoleon : Allow a different format in dosctrings for better clarity ( https://sphinxcontrib-napoleon.readthedocs.io/ )

texext : Sphinx extensions for working with LaTeX math ( https://github.com/matthew-brett/texext )

traits : Enthought Tool Suite: Explicitly typed attributes for Python ( https://docs.enthought.com/traits )

transforms3d : Functions for 3D coordinate transformations ( https://matthew-brett.github.io/transforms3d )

ufl : Unified Form Language for declaration of for FE discretizations ( https://github.com/FEniCS/ufl )

umap-learn : Uniform Manifold Approximation and Projection ( https://umap-learn.readthedocs.io/ )

unyt : package for handling numpy arrays with units ( https://github.com/yt-project/unyt )

visvis : An object oriented approach to visualization of 1D to 4D data ( https://github.com/almarklein/visvis )

xgboost : XGBoost Python Package ( https://xgboost.readthedocs.io )

xopen : Open compressed files transparently ( https://pypi.python.org/pypi/xopen )

zarr : Chunked, compressed, N-dimensional arrays for Python ( https://github.com/zarr-developers/zarr-python )

Add an ebuild in portage :

The ebuild is now in the portage tree.

You can also use layman : emerge layman then layman -a science

For Paludis use this rsync : rsync://gentoo.zugaina.org/science-portage

If you have a problem : ycarus(-at-)zugaina.org