Ycarus Gentoo ebuild

science

These ebuilds come from .

If you have some problems, go to the official site first.

dev-python

MagnetoResistance-tool : Create calibration matrix to correct for magneto-resistance in resistive sensors ( https://gitlab.science.ru.nl/hfml/MRcalib )

affine : Library for handling affine transformations of the plane ( https://github.com/rasterio/affine )

aiohttp-retry : Simple retry client for aiohttp ( https://github.com/inyutin/aiohttp_retry )

anndata : Handling annotated data matrices in memory and on disk ( http://anndata.readthedocs.io/ )

annexremote : Helper module to easily develop git-annex remotes ( https://github.com/Lykos153/AnnexRemote )

anys : Matchers for pytest ( https://github.com/jwodder/anys )

archspec : Labels for various aspects of a system architecture like CPU, etc. ( https://archspec.readthedocs.io/en/latest/index.html )

argparse-dataclass : Declarative CLIs with argparse and dataclasses ( https://pypi.org/project/argparse-dataclass/ )

array-api-compat : Compatibility layer for NumPy to support the Array API ( https://github.com/data-apis/array-api-compat )

asciitree : ASCII trees in python ( https://github.com/mbr/asciitree )

asdf : Python library for the Advanced Scientific Data Format ( https://asdf.readthedocs.io/en/latest/ )

asdf-standard : Standards document describing ASDF, Advanced Scientific Data Format. ( HOMEPAGE=" )

asdf-transform-schemas : ASDF schemas for validating transform tags. ( HOMEPAGE=" )

astropy : Core functionality for performing astrophysics with Python ( https://www.astropy.org/ )

astropy-healpix : HEALPix for Astropy ( https://github.com/astropy/astropy-healpix )

astropy-helpers : Helpers for Astropy and Affiliated packages ( https://github.com/astropy/astropy-helpers )

astropy-sphinx-theme : The sphinx theme for Astropy and affiliated packages ( https://github.com/astropy/astropy-sphinx-theme )

astroquery : A collection of packages to access online astronomical resources ( https://astroquery.readthedocs.io/ )

astroscrappy : Speedy Cosmic Ray Annihilation Package in Python ( https://github.com/astropy/astroscrappy )

autograd : Efficiently computes derivatives of numpy code. ( HOMEPAGE=" )

bokeh : Statistical and interactive HTML plots for Python ( https://bokeh.org/ )

boost-histogram : Python bindings for the C++14 Boost::Histogram library ( HOMEPAGE=" )

ccdproc : Astropy affiliated package for reducing optical/IR CCD data ( https://github.com/astropy/ccdproc )

cligj : Library for processing GeoJSON commands ( https://github.com/mapbox/cligj )

colorcet : Collection of perceptually uniform colormaps ( https://holoviz.org )

colormath : Easy color scales and color conversion for Python ( https://pypi.org/project/colormath/ )

colormath2 : Easy color scales and color conversion for Python ( http://python-colormath.readthedocs.org/ )

conda-inject : Helper functions for injecting a conda environment into the current python environment ( https://pypi.org/project/conda-inject/ )

connection_pool : Thread safe connection pool ( https://github.com/zhouyl/ConnectionPool )

cymbal : Add functionality missing from the python libclang bindings ( https://pypi.org/project/cymbal/ )

dandi-schema : Schemata for DANDI archive project ( https://github.com/dandi/dandi-schema )

dask : Flexible parallel computing library for analytics ( https://github.com/dask/dask )

dask-awkward : Native Dask collection for awkward arrays, and the library to use it. ( HOMEPAGE=" )

dask-histogram : Histograms with task scheduling. ( HOMEPAGE=" )

datrie : Implements a topological sort algorithm ( https://github.com/pytries/datrie )

delegator : Subprocesses for Humans 2.0. ( https://github.com/amitt001/delegator.py )

distinctipy : Lightweight package for generating visually distinct colours ( HOMEPAGE=" )

dnaio : dnaio processes FASTQ, FASTA and uBAM files ( https://github.com/marcelm/dnaio/ )

docstring-parser : Parse Python docstrings in various flavors ( https://github.com/rr-/docstring_parser )

donfig : Configure a package including defaults, env variable loading, and yaml loading ( ttps://donfig.readthedocs.io/en/latest )

dpath : Accessing and searching dictionaries via /slashed/paths ( https://pypi.org/project/dpath/ )

dpctl : Data Parallel Control ( https://github.com/IntelPython/dpctl )

expecttest : This library implements expect tests (also known as \"golden\" tests) ( https://github.com/pytorch/expecttest )

extension-helpers : Utilities for building and installing packages in the Astropy ecosystem ( https://github.com/astropy/astropy-helpers )

ezdxf : Python interface to DXF ( https://pypi.org/project/ezdxf/ )

fiona : API for reading/writing vector geospatial data ( https://github.com/Toblerity/fiona )

fscacher : Cache results of operations on heavy file trees ( https://github.com/con/fscacher )

fslpy : The FSL Python Library ( https://git.fmrib.ox.ac.uk/fsl/fslpy )

fusepy : Simple ctypes bindings for FUSE ( https://github.com/fusepy/fusepy )

gammapy : A Python package for gamma-ray astronomy ( https://github.com/gammapy/gammapy )

geopandas : Python tools for geographic data ( HOMEPAGE=" )

gffpandas : Python library to Filter and sort GFF3 annotations ( https://github.com/foerstner-lab/gffpanda )

google-cloud-storage : Google Cloud Storage API client library ( https://github.com/googleapis/python-storage )

grabbit : Get grabby with file trees ( https://github.com/grabbles/grabbit )

gwcs : Generalized World Coordinate System ( https://gwcs.readthedocs.io/en/latest/ )

hdbscan : A high performance implementation of HDBSCAN clustering. ( https://github.com/scikit-learn-contrib/hdbscan )

hdf5storage : Read/write Python types to/from HDF5 files, including MATLAB v7.3 MAT files ( https://github.com/frejanordsiek/hdf5storage )

hdmf : The Hierarchical Data Modeling Framework ( https://github.com/hdmf-dev/hdmf )

hdmf-zarr : Zarr I/O backend for HDMF ( https://github.com/hdmf-dev/hdmf-zarr )

heudiconv : Flexible DICOM conversion to structured directory layouts ( HOMEPAGE=" )

hist : Histogramming for analysis powered by boost-histogram ( https://github.com/scikit-hep/hist )

histoprint : Pretty print histograms to the console ( https://github.com/scikit-hep/histoprint )

holoviews : Make data analysis and visualization seamless and simple ( https://holoviews.org )

hopcroftkarp : python frontend for the fast ripser tda tool ( https://ripser.scikit-tda.org/ https://github.com/sofiatolaosebikan/hopcroftkarp )

interleave : Yield from multiple iterators as values become available ( https://github.com/jwodder/interleave )

isal : Faster zlib, gzip compatible (de)compression using ISA-L library ( https://github.com/pycompression/python-isal https://pypi.org/project/isal )

jacobi : Numerical derivatives for analytic functions with arbitrary precision. ( https://github.com/HDembinski/jacobi )

kmapper : Python implementation of Mapper algorithm for Topological Data Analysis ( https://kepler-mapper.scikit-tda.org )

latexify_py : Generate LaTeX expression from Python code ( https://github.com/google/latexify_py )

lazy_ops : Lazy transposing and slicing of h5py and Zarr data ( https://github.com/catalystneuro/lazy_ops )

lightgbm : LightGBM Python Package ( https://github.com/microsoft/LightGBM )

linesep : Handling lines with arbitrary separators ( https://github.com/jwodder/linesep )

llvmlite : Python wrapper around the llvm C++ library ( https://github.com/numba/llvmlite )

logzero : Robust and effective logging for Python 2 and 3 ( https://pypi.org/project/logzero )

lzstring : String encoding/decoding of binary data ( https://pypi.org/project/lzstring/ )

methodtools : Expand functools features to methods, classmethods, staticmethods ( https://github.com/youknowone/methodtools )

mkl-service : Python hooks for Intel Math Kernel Library runtime control settings ( https://github.com/IntelPython/mkl-service )

mkl_fft : NumPy-based Python interface to Intel MKL FFT functionality ( https://github.com/IntelPython/mkl_fft )

mkl_random : Python interface to Intel Math Kernel Library's random number generation ( https://github.com/IntelPython/mkl_random )

mkl_umath : Package implementing NumPy's UFuncs based on SVML and MKL VML ( https://github.com/IntelPython/mkl_umath )

neo : Read and represent a wide range of neurophysiology file formats in Python ( https://github.com/NeuralEnsemble/python-neo )

nptyping : Type hints for Numpy ( HOMEPAGE=" )

num2words : Modules to convert numbers to words. ( https://github.com/savoirfairelinux/num2words )

numba : NumPy aware dynamic Python compiler using LLVM ( https://numba.pydata.org/ )

numcodecs : Data storage buffer compression and transformation codecs ( https://github.com/zarr-developers/numcodecs )

numdifftools : Solve automatic numerical differentiation problems in one or more variables ( HOMEPAGE=" )

nwb2bids : Next-generation file format (NGFF) for storing bioimaging data in the cloud ( https://github.com/con/nwb2bids )

nwbinspector : Inspect NWB files for compliance with NWB Best Practices ( https://github.com/NeurodataWithoutBorders/nwbinspector )

pandas-stubs : Public type stubs for pandas ( https://github.com/pandas-dev/pandas-stubs )

panel : High-level app and dashboarding solution for Python ( https://panel.holoviz.org )

param : Make Python code clearer and more reliable by declaring Parameters ( https://param.holoviz.org )

persim : Distances and representations of persistence diagrams ( https://persim.scikit-tda.org/ )

photutils : Affiliated package for image photometry utilities ( https://github.com/astropy/photutils )

plac : Parsing the Command Line the Easy Way ( https://pypi.org/project/plac/ )

probeinterface : Python package to handle probe layout, geometry and wiring to device ( https://github.com/SpikeInterface/probeinterface )

prov : W3C provenance data dodel library ( https://pypi.org/project/prov/ )

py2bit : Python library for accessing 2bit files ( https://github.com/deeptools/py2bit )

pyBigWig : quick access to and creation of bigWig files ( https://github.com/deeptools/pyBigWig )

pyaml-env : Parse YAML configuration with environment variables in Python ( https://pypi.org/project/pyaml-env/ )

pybedtools : Use BED and GFF files from python using BEDtools ( https://daler.github.io/pybedtools )

pybind11-stubgen : PEP 561 type stubs generator for pybind11 modules ( https://github.com/sizmailov/pybind11-stubgen )

pyct : Python packaging Common Tasks ( HOMEPAGE=" )

pyerfa : Python bindings for ERFA ( https://github.com/liberfa/pyerfa/ )

pyerrors : Error propagation and statistical analysis for Markov chain Monte Carlos ( HOMEPAGE=" )

pyfaidx : Efficient pythonic random access to fasta subsequences ( https://github.com/mdshw5/pyfaidx )

pynrrd : Simple pure-python module for reading and writing nrrd files ( https://github.com/mhe/pynrrd )

pynwb : A Python API for working with Neurodata stored in the NWB Format ( https://github.com/NeurodataWithoutBorders/pynwb )

pyout : Terminal styling for structured data ( https://github.com/pyout/pyout )

pysolar : Collection of Python libraries for simulating the irradiation by the sun ( https://pysolar.org/ )

pytest-doctestplus : Pytest plugin with advanced doctest features ( https://astropy.org/ )

python-gantt : Draw Gantt charts from Python ( https://pypi.org/project/python-gantt/ )

python-igraph : Python interface for igraph ( https://igraph.org )

python-rapidjson : Python wrapper around rapidjson ( HOMEPAGE=" )

pyviz_comms : Bidirectional communication for the HoloViz ecosystem ( https://holoviz.org )

pyvote : Estimate the probability of votes changing election outcomes ( https://github.com/TheChymera/pyvote.git )

pyzo : The Python IDE for scientific computing ( https://pyzo.org/ )

regions : Astropy affilated package for region handling ( https://github.com/astropy/regions )

reproject : Reproject astronomical images ( https://reproject.readthedocs.io/ )

repsep_utils : Utilities Supporting RepSeP-style documents ( https://github.com/TheChymera/repsep_utils )

reretry : An easy-to-use but functional retry decorator in python ( https://github.com/leshchenko1979/reretry )

resample : Randomization-based inference in Python ( https://github.com/scikit-hep/resample )

rich-click : Format click help output nicely with rich ( https://pypi.org/project/rich-click/ )

ripser : python frontend for the fast ripser tda tool ( https://ripser.scikit-tda.org/ )

scooby : Easily report Python package versions and hardware resources ( https://pypi.org/project/scooby/ )

smart-open : Utils for streaming large files (S3, HDFS, gzip, bz2...) ( https://github.com/piskvorky/smart_open )

snakemake : Make-like task language ( https://snakemake.readthedocs.io )

snakemake-interface-common : Common functions and classes for Snakemake and its plugins ( https://pypi.org/project/snakemake-interface-common/ )

snakemake-interface-executor-plugins : Stable interface for interactions between Snakemake and its executor plugins ( https://pypi.org/project/snakemake-interface-executor-plugins/ )

snakemake-interface-report-plugins : The interface for Snakemake report plugins ( https://pypi.org/project/snakemake-interface-report-plugins/ )

snakemake-interface-storage-plugins : Stable interface for interactions between Snakemake and its storage plugins ( https://pypi.org/project/snakemake-interface-storage-plugins/ )

snuggs : S-expressions for numpy ( https://github.com/mapbox/snuggs )

soundfile : SoundFile is an audio library based on libsndfile, CFFI, and NumPy ( https://github.com/bastibe/python-soundfile/ )

spectra : Easy color scales and color conversion for Python ( https://pypi.org/project/spectra/ )

specutils : Package for spectroscopic astronomical data ( https://github.com/astropy/specutils )

sphinx-astropy : Sphinx extensions and configuration specific to the Astropy project ( https://www.astropy.org/ )

sphinx-automodapi : Sphinx extension for auto-generating API documentation for entire modules ( https://www.astropy.org/ )

sphinxcontrib-napoleon : Allow a different format in dosctrings for better clarity ( https://sphinxcontrib-napoleon.readthedocs.io/ )

spikeinterface : A Python-based module for creating flexible and robust spike sorting pipelines. ( https://github.com/SpikeInterface/spikeinterface )

stopit : Timeout control decorator and context managers ( https://pypi.org/project/stopit )

texext : Sphinx extensions for working with LaTeX math ( https://github.com/matthew-brett/texext )

throttler : Easy throttling with asyncio support ( https://github.com/uburuntu/throttler )

traits : Enthought Tool Suite: Explicitly typed attributes for Python ( HOMEPAGE=" )

transforms3d : Functions for 3D coordinate transformations ( https://matthew-brett.github.io/transforms3d/ )

uhi : Universal Histogram Interface ( https://github.com/scikit-hep/uhi )

visvis : An object oriented approach to visualization of 1D to 4D data ( https://github.com/almarklein/visvis )

wirerope : A wrapper interface for python callables ( https://github.com/youknowone/wirerope )

wraps : Meaningful and safe wrapping types. ( https://github.com/nekitdev/wraps )

xgboost : Scalable, Portable and Distributed Gradient Boosting Library. ( HOMEPAGE=" )

xopen : Open compressed files transparently ( https://github.com/marcelm/xopen/ )

yte : A YAML template engine with Python expressions ( https://pypi.org/project/yte/ )

zarr : Chunked, compressed, N-dimensional arrays for Python ( ttps://zarr.readthedocs.io )

zarr_checksum : Calculatine zarr checksums from local or cloud storage ( https://github.com/dandi/zarr_checksum )

Add an ebuild in portage :

The ebuild is now in the portage tree.

You can also use layman : emerge layman then layman -a science

For Paludis use this rsync : rsync://gentoo.zugaina.org/science-portage

If you have a problem : ycarus(-at-)zugaina.org