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dev-python

MagnetoResistance-tool : Create calibration matrix to correct for magneto-resistance in resistive sensors ( https://gitlab.science.ru.nl/hfml/MRcalib )

affine : Library for handling affine transformations of the plane ( https://github.com/rasterio/affine )

annexremote : Helper module to easily develop git-annex remotes ( https://github.com/Lykos153/AnnexRemote )

anys : Matchers for pytest ( https://github.com/jwodder/anys )

archspec : Labels for various aspects of a system architecture like CPU, etc. ( https://archspec.readthedocs.io/en/latest/index.html )

asciitree : ASCII trees in python ( https://github.com/mbr/asciitree )

asdf : Python library for the Advanced Scientific Data Format ( https://asdf.readthedocs.io/en/latest/ )

astropy : Core functionality for performing astrophysics with Python ( https://www.astropy.org/ )

astropy-healpix : HEALPix for Astropy ( https://github.com/astropy/astropy-healpix )

astropy-helpers : Helpers for Astropy and Affiliated packages ( https://github.com/astropy/astropy-helpers )

astropy-sphinx-theme : The sphinx theme for Astropy and affiliated packages ( https://github.com/astropy/astropy-sphinx-theme )

astroquery : A collection of packages to access online astronomical resources ( https://astroquery.readthedocs.io/ )

astroscrappy : Speedy Cosmic Ray Annihilation Package in Python ( https://github.com/astropy/astroscrappy )

av : Pythonic bindings for FFmpeg's libraries. ( https://github.com/PyAV-Org/PyAV https://pypi.org/project/av/ )

awkward : Manipulate JSON-like data with NumPy-like idioms. ( https://github.com/scikit-hep/awkward )

awkward-cpp : awkward-cpp bindings for Python ( https://github.com/scikit-hep/awkward/ )

bokeh : Statistical and interactive HTML plots for Python ( https://bokeh.org/ )

boost-histogram : Python bindings for the C++14 Boost::Histogram library ( https://github.com/scikit-hep/boost-histogram )

ccdproc : Astropy affiliated package for reducing optical/IR CCD data ( https://github.com/astropy/ccdproc )

cligj : Library for processing GeoJSON commands ( https://github.com/mapbox/cligj )

colorcet : Collection of perceptually uniform colormaps ( https://holoviz.org )

colormath : Easy color scales and color conversion for Python ( https://pypi.org/project/colormath/ )

connection_pool : Thread safe connection pool ( https://github.com/zhouyl/ConnectionPool )

cymbal : Add functionality missing from the python libclang bindings ( https://pypi.org/project/cymbal/ )

dandi-schema : Schemata for DANDI archive project ( https://github.com/dandi/dandi-schema )

datrie : Implements a topological sort algorithm ( https://github.com/pytries/datrie )

delegator : Subprocesses for Humans 2.0. ( https://github.com/amitt001/delegator.py )

distinctipy : Lightweight package for generating visually distinct colours ( HOMEPAGE=" )

docstring-parser : Parse Python docstrings in various flavors ( https://github.com/rr-/docstring_parser )

dpath : Accessing and searching dictionaries via /slashed/paths ( https://pypi.org/project/dpath/ )

dpctl : Data Parallel Control ( https://github.com/IntelPython/dpctl )

dpnp : Data Parallel Extension for NumPy ( https://github.com/IntelPython/dpnp )

extension-helpers : Utilities for building and installing packages in the Astropy ecosystem ( https://github.com/astropy/astropy-helpers )

ezdxf : Python interface to DXF ( https://pypi.org/project/ezdxf/ )

fiona : API for reading/writing vector geospatial data ( https://github.com/Toblerity/fiona )

fscacher : Cache results of operations on heavy file trees ( https://github.com/con/fscacher )

fslpy : The FSL Python Library ( https://git.fmrib.ox.ac.uk/fsl/fslpy )

gammapy : A Python package for gamma-ray astronomy ( https://github.com/gammapy/gammapy )

geopandas : Python tools for geographic data ( https://github.com/geopandas/geopandas https://pypi.org/project/geopandas/ )

gffpandas : Python library to Filter and sort GFF3 annotations ( https://github.com/foerstner-lab/gffpanda )

gmsh_interop : Interoperability with Gmsh for Python ( https://github.com/inducer/gmsh_interop/ )

google-cloud-storage : Google Cloud Storage API client library ( https://github.com/googleapis/python-storage )

grabbit : Get grabby with file trees ( https://github.com/grabbles/grabbit )

gwcs : Generalized World Coordinate System ( https://gwcs.readthedocs.io/en/latest/ )

hdbscan : A high performance implementation of HDBSCAN clustering. ( https://github.com/scikit-learn-contrib/hdbscan )

hdf5storage : Read/write Python types to/from HDF5 files, including MATLAB v7.3 MAT files ( https://github.com/frejanordsiek/hdf5storage )

hdmf : The Hierarchical Data Modeling Framework ( https://github.com/hdmf-dev/hdmf )

hdmf-zarr : Zarr I/O backend for HDMF ( https://github.com/hdmf-dev/hdmf-zarr )

heudiconv : Flexible DICOM conversion to structured directory layouts ( HOMEPAGE=" )

holoviews : Make data analysis and visualization seamless and simple ( https://holoviews.org )

hopcroftkarp : python frontend for the fast ripser tda tool ( https://ripser.scikit-tda.org/ https://github.com/sofiatolaosebikan/hopcroftkarp )

interleave : Yield from multiple iterators as values become available ( https://github.com/jwodder/interleave )

jacobi : Numerical derivatives for analytic functions with arbitrary precision. ( https://github.com/HDembinski/jacobi )

kmapper : Python implementation of Mapper algorithm for Topological Data Analysis ( https://kepler-mapper.scikit-tda.org )

latexify_py : Generate LaTeX expression from Python code ( https://github.com/google/latexify_py )

lazy_ops : Lazy transposing and slicing of h5py and Zarr data ( https://github.com/catalystneuro/lazy_ops )

logzero : Robust and effective logging for Python 2 and 3 ( https://pypi.org/project/logzero )

lzstring : String encoding/decoding of binary data ( https://pypi.org/project/lzstring/ )

matlabengine : A module to call MATLAB from Python ( https://github.com/mathworks/matlab-engine-for-python )

meshpy : Quality triangular and tetrahedral mesh generation for Python ( https://mathema.tician.de/software/meshp )

mkl-service : Python hooks for Intel Math Kernel Library runtime control settings ( https://github.com/IntelPython/mkl-service )

mkl_fft : NumPy-based Python interface to Intel MKL FFT functionality ( https://github.com/IntelPython/mkl_fft )

mkl_random : Python interface to Intel Math Kernel Library's random number generation ( https://github.com/IntelPython/mkl_random )

mkl_umath : Package implementing NumPy's UFuncs based on SVML and MKL VML ( https://github.com/IntelPython/mkl_umath )

multimethod : Library allowing Python function overloads based on argument types ( https://github.com/coady/multimethod )

neo : Read and represent a wide range of neurophysiology file formats in Python ( https://github.com/NeuralEnsemble/python-neo )

nptyping : Type hints for Numpy ( HOMEPAGE=" )

num2words : Modules to convert numbers to words. ( https://github.com/savoirfairelinux/num2words )

numcodecs : Data storage buffer compression and transformation codecs ( https://github.com/zarr-developers/numcodecs )

nwbinspector : Inspect NWB files for compliance with NWB Best Practices ( https://github.com/NeurodataWithoutBorders/nwbinspector )

pandas-stubs : Public type stubs for pandas ( https://github.com/pandas-dev/pandas-stubs )

panel : High-level app and dashboarding solution for Python ( https://panel.holoviz.org )

param : Make Python code clearer and more reliable by declaring Parameters ( https://param.holoviz.org )

persim : Distances and representations of persistence diagrams ( https://persim.scikit-tda.org/ )

photutils : Affiliated package for image photometry utilities ( https://github.com/astropy/photutils )

plac : Parsing the Command Line the Easy Way ( https://pypi.org/project/plac/ )

probeinterface : Python package to handle probe layout, geometry and wiring to device ( https://github.com/SpikeInterface/probeinterface )

py2bit : Python library for accessing 2bit files ( https://github.com/dpryan79/py2bit )

pyBigWig : quick access to and creation of bigWig files ( https://github.com/dpryan79/pyBigWig )

pyaml-env : Parse YAML configuration with environment variables in Python ( https://pypi.org/project/pyaml-env/ )

pybind11-stubgen : PEP 561 type stubs generator for pybind11 modules ( https://github.com/sizmailov/pybind11-stubgen )

pyct : Python packaging Common Tasks ( https://holoviz.org )

pyerfa : Python bindings for ERFA ( https://github.com/liberfa/pyerfa/ )

pynrrd : Simple pure-python module for reading and writing nrrd files ( https://github.com/mhe/pynrrd )

pynwb : A Python API for working with Neurodata stored in the NWB Format ( https://github.com/NeurodataWithoutBorders/pynwb )

pyout : Terminal styling for structured data ( https://github.com/pyout/pyout )

pysolar : Collection of Python libraries for simulating the irradiation by the sun ( https://pysolar.org/ )

pytest-doctestplus : Pytest plugin with advanced doctest features ( https://astropy.org/ )

python-gantt : Draw Gantt charts from Python ( https://pypi.org/project/python-gantt/ )

python-igraph : Python interface for igraph ( https://igraph.org )

pyvista : Easier Pythonic interface to VTK ( https://docs.pyvista.org )

pyviz_comms : Bidirectional communication for the HoloViz ecosystem ( https://holoviz.org )

pyvote : Estimate the probability of votes changing election outcomes ( https://github.com/TheChymera/pyvote.git )

pyzo : The Python IDE for scientific computing ( https://pyzo.org/ )

rasterio : Command line tool and API for geospatial raster data ( https://github.com/rasterio/rasterio )

rasterstats : Python module for summarizing geospatial raster datasets based on vectors ( https://github.com/perrygeo/python-rasterstats )

regions : Astropy affilated package for region handling ( https://github.com/astropy/regions )

reproject : Reproject astronomical images ( https://reproject.readthedocs.io/ )

repsep_utils : Utilities Supporting RepSeP-style documents ( https://github.com/TheChymera/repsep_utils )

reretry : An easy-to-use but functional retry decorator in python ( https://github.com/leshchenko1979/reretry )

rich-click : Format click help output nicely with rich ( https://pypi.org/project/rich-click/ )

ripser : python frontend for the fast ripser tda tool ( https://ripser.scikit-tda.org/ )

scooby : Easily report Python package versions and hardware resources ( https://pypi.org/project/scooby/ )

smart-open : Utils for streaming large files (S3, HDFS, gzip, bz2...) ( https://github.com/RaRe-Technologies/smart_open )

snakemake : Make-like task language ( https://snakemake.readthedocs.io )

snuggs : S-expressions for numpy ( https://github.com/mapbox/snuggs )

spectra : Easy color scales and color conversion for Python ( https://pypi.org/project/spectra/ )

specutils : Package for spectroscopic astronomical data ( https://github.com/astropy/specutils )

sphinx-astropy : Sphinx extensions and configuration specific to the Astropy project ( https://www.astropy.org/ )

sphinx-automodapi : Sphinx extension for auto-generating API documentation for entire modules ( https://www.astropy.org/ )

sphinxcontrib-napoleon : Allow a different format in dosctrings for better clarity ( https://sphinxcontrib-napoleon.readthedocs.io/ )

spikeinterface : A Python-based module for creating flexible and robust spike sorting pipelines. ( https://github.com/SpikeInterface/spikeinterface )

stopit : Timeout control decorator and context managers ( https://pypi.org/project/stopit )

texext : Sphinx extensions for working with LaTeX math ( https://github.com/matthew-brett/texext )

throttler : Easy throttling with asyncio support ( https://github.com/uburuntu/throttler )

traits : Enthought Tool Suite: Explicitly typed attributes for Python ( HOMEPAGE=" )

transforms3d : Functions for 3D coordinate transformations ( https://matthew-brett.github.io/transforms3d/ )

typish : Functionality for types ( https://pypi.org/project/typish )

uhi : Universal Histogram Interface ( https://github.com/scikit-hep/uhi )

vector : Vector classes and utilities ( https://github.com/scikit-hep/vector )

visvis : An object oriented approach to visualization of 1D to 4D data ( https://github.com/almarklein/visvis )

wraps : Meaningful and safe wrapping types. ( https://github.com/nekitdev/wraps )

xgboost : XGBoost Python Package ( HOMEPAGE=" )

yte : A YAML template engine with Python expressions ( https://pypi.org/project/yte/ )

zarr : Chunked, compressed, N-dimensional arrays for Python ( https://github.com/zarr-developers/zarr-python )

zarr_checksum : Calculatine zarr checksums from local or cloud storage ( https://github.com/dandi/zarr_checksum )

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