Ycarus Gentoo ebuild

science

These ebuilds come from .

If you have some problems, go to the official site first.

sci-libs

HDF5Plugin-Zstandard : ZSTD plugin for hdf5 ( https://github.com/aparamon/HDF5Plugin-Zstandard )

amber99sb_phipsi : AMBER99SB PHI PSI table (Lindorff-Larsen et al., Proteins 78, 1950-58, 2010) ( https://research.cbc.osu.edu/bruschweiler.1/protein-force-field/ )

amber99sbnmr : AMBER99SBnmr1 force field (Lindorff-Larsen et al., Proteins 78, 1950-58, 2010) ( https://research.cbc.osu.edu/bruschweiler.1/protein-force-field/ )

amber99sbnmr-ildn : AMBER99SBnmr1-ILDN FF (Lindorff-Larsen et al., Proteins 78, 1950-58, 2010) ( https://research.cbc.osu.edu/bruschweiler.1/protein-force-field/ )

aocl-libm : Optimized libm replacement from AMD for x86_64 architectures ( https://developer.amd.com/amd-aocl/amd-math-library-libm/" einfo "\t ${HOMEPAGE} )

aocl-sparse : AMD library for optimized sparse BLAS operations ( https://developer.amd.com/amd-aocl/ )

arpack : Arnoldi package library to solve large scale eigenvalue problems ( HOMEPAGE=" )

arrayfire : general purpose GPU library ( https://arrayfire.com/ )

asl : Hardware accelerated multiphysics simulation platform ( http://asl.org.il/ )

bids-validator : Validator for the Brain Imaging Data Structure ( https://github.com/bids-standard/bids-validator )

blis-amd : AMD optimized BLAS-like Library Instantiation Software Framework ( https://developer.amd.com/amd-aocl/ )

ccif : CCP4 ccif lib ( https://www.ccp4.ac.uk/ )

ciftilib : C++ Library for reading and writing CIFTI-2 and CIFTI-1 files ( https://github.com/Washington-University/CiftiLib )

clfft : Library containing FFT functions written in OpenCL ( https://github.com/clMathLibraries/clFFT )

clrng : A library for uniform random number generation in OpenCL ( https://github.com/clMathLibraries/clRNG )

cs-rosetta-db : System for chemical shifts based protein structure prediction using ROSETTA ( https://spin.niddk.nih.gov/bax/software/CSROSETTA/ )

ensmallen : header only C++ library for numerical optimization ( https://ensmallen.org )

etsf_io : A library of F90 routines to read/write the ETSF file format ( https://github.com/ElectronicStructureLibrary/libetsf_io )

fast5 : C++ header-only library for reading Oxford Nanopore Fast5 files ( https://github.com/mateidavid/fast5 )

fdlibm : C math library supporting IEEE 754 floating-point arithmetic ( https://www.netlib.org/fdlibm )

fgsl : A Fortran interface to the GNU Scientific Library ( https://doku.lrz.de/display/PUBLIC/FGSL+-+A+Fortran+interface+to+the+GNU+Scientific+Library/ )

flexiblas : BLAS/LAPACK wrapper library for runtime switching of backends ( https://www.mpi-magdeburg.mpg.de/projects/flexiblas )

fox : A library designed to allow the easy use of XML from Fortran ( https://homepages.see.leeds.ac.uk/~earawa/FoX// )

htslib-plugins : iRODs plugins for =htslib-1.4 ( https://github.com/samtools/htslib-plugins )

iRODS : Integrated Rule Oriented Data System, a data management software ( https://irods.org )

ipp : Intel Integrated Performance Primitive library ( http://software.intel.com/en-us/articles/intel-ipp/ )

itk : NLM Insight Segmentation and Registration Toolkit ( http://www.itk.org )

labbookdb : Lab Book Database Framework ( https://github.com/TheChymera/LabbookDB )

lib2bit : C library for accessing 2bit files ( https://github.com/dpryan79/lib2bit )

libStatGen : Set of classes for creating statistical genetic programs ( https://github.com/statgen/libStatGen )

libflame-amd : AMD optimized high-performance object-based library for DLA computations ( https://developer.amd.com/amd-aocl/ )

libmatheval : library to parse and evaluate symbolic expressions ( https://www.gnu.org/software/libmatheval/ )

libmaus2 : Library for biobambam2 ( https://github.com/gt1/libmaus )

libsufr : LIBrary of Some Useful Fortran Routines ( http://libsufr.sourceforge.net/ )

lwpr : The Locally Weighted Projection Regression Library ( https://web.inf.ed.ac.uk/slmc )

mesquite : Mesh Quality Improvement Toolkit ( https://trilinos.github.io/mesquite.html )

mlpack : scalable C++ machine learning library ( https://www.mlpack.org/ )

nexus : Data format for neutron and x-ray scattering data ( http://nexusformat.org/ )

nibabel : Access a cacophony of neuro-imaging file formats ( https://nipy.org/nibabel/ )

nipy : Neuroimaging tools for Python ( https://nipy.org/ )

nipype : Neuroimaging in Python: Pipelines and Interfaces ( http://nipy.sourceforge.net/nipype/ )

optpp : C++ library for non-linear optimization ( https://software.sandia.gov/opt++/ )

pfft : Parallel 3d FFT ( https://www-user.tu-chemnitz.de/~potts/workgroup/pippig/software.php.en )

pg2plplot : Assist the transition from PGPlot to PLplot in Fortran programs ( http://pg2plplot.sourceforge.net )

pybids : Python package to access BIDS datasets ( https://github.com/INCF/pybids )

pydicom : A pure python package for parsing DICOM files ( http://www.pydicom.org/ )

pytorch : Tensors and Dynamic neural networks in Python with strong GPU acceleration ( https://pytorch.org/ )

rdkit : Cheminformatics and machine-learning software written in C++ and Python ( http://www.rdkit.org/ )

scikits_video : Video processing in Python ( https://scikit-image.org/ )

simpleitk : Layer on top of ITK for rapid prototyping, education and interpreted languages. ( https://simpleitk.org/ )

spams-python : Optimization toolbox for solving various sparse estimation problems ( http://spams-devel.gforge.inria.fr/index.html )

spyking-circus : Fast spike sorting by template matching ( https://github.com/spyking-circus/spyking-circus/ )

starparse : Library for parsing NMR star files (peak-list format) and CIF files ( http://burrow-owl.sourceforge.net/ )

torchvision : Datasets, transforms and models to specific to computer vision ( https://github.com/pytorch/vision )

vxl : C++ computer vision research libraries ( https://vxl.github.io/ )

wannier90 : Calculates maximally localized Wannier functions (MLWFs) ( http://www.wannier.org/ )

xblas : Extra Precise Basic Linear Algebra Subroutines ( https://www.netlib.org/xblas/ )

xraylib : X-ray matter interaction cross sections for X-ray fluorescence library ( https://github.com/tschoonj/xraylib )

zarja : Scientific multi-agent simulation library ( https://sourceforge.net/projects/zarja/ )

Add an ebuild in portage :

The ebuild is now in the portage tree.

You can also use layman : emerge layman then layman -a science

For Paludis use this rsync : rsync://gentoo.zugaina.org/science-portage

If you have a problem : ycarus(-at-)zugaina.org